SSRL Science Highlights Archive

Approximately 1,700 scientists visit SSRL annually to conduct experiments in broad disciplines including life sciences, materials, environmental science, and accelerator physics. Science highlights featured here and in our monthly newsletter, Headlines, increase the visibility of user science as well as the important contribution of SSRL in facilitating basic and applied scientific research. Many of these scientific highlights have been included in reports to funding agencies and have been picked up by other media. Users are strongly encouraged to contact us when exciting results are about to be published. We can work with users and the SLAC Office of Communication to develop the story and to communicate user research findings to a much broader audience. Visit SSRL Publications for a list of the hundreds of SSRL-related scientific papers published annually. Contact us to add your most recent publications to this collection.

SCIENCE HIGHLIGHT BANNER IMAGES

March 2013
Hirohito Ogasawara, Stanford Synchrotron Radiation Lightsource, Dennis Nordlund, Stanford Synchrotron Radiation Lightsource, Anders Nilsson, Stanford Synchrotron Radiation Lightsource and SUNCAT
Precursor Image

An international collaboration of scientists, including several from SSRL, has taken advantage of the broad range of photon science capabilities available at the lab to investigate a proposal that adsorption and desorption of a molecule to a surface – both fundamental processes of interfacial chemistry – proceed through a transient “precursor” state in which the molecule is weakly bound to the surface.

SXR, BL13-2
March 2013
John R. Bargar, Stanford Synchrotron Radiation Lightsource
Figure 2

As part of a larger, DOE-funded investigation into bioremediation of uranium in contaminated aquifers, a group of SSRL scientists made a surprising discovery about how uranium ions behave in the environment. In addition to overturning current scientific models, this research will lead to more efficient, less costly methods for uranium cleanup and mining.

X-ray Absorption Spectroscopy
BL2-3, BL10-2, BL11-2
February 2013
Hexiang Deng (UC Berkeley), Omar M. Yaghi (UC Berkeley)
MOF Porosity Figure 1

Recently, scientists at the University of California, Berkeley and Lawrence Berkeley National Laboratory and their collaborators synthesized a series of metal-organic frameworks (MOFs) with pores up to 98 Å in diameter—large enough to house protein molecules. For the first time the researchers were able to design strategies to overcome three major obstacles to increasing pore capacity...

Powder diffraction
BL2-1
February 2013
Jorge L. Gardea-Torresdey (University of Texas at El Paso), Joy C. Andrews (Stanford Synchrotron Radiation Lightsource), Jose A. Hernandez-Viezcas (University of Texas at El Paso)
ENP uptake in soybean plants Figure 1

The global production of engineered nanoparticles (ENPs) is currently a trillion-dollar industry. However, ENPs behave differently than their bulk counterparts, mostly due to increased specific surface area and reactivity, which has raised concerns about their fate, transport, and toxicity in the environment. A growing number of products containing ENPs are already on the market, including ZnO nanoparticles widely used sunscreen, gas sensors, pigments and other applications, and nanoceria (Ce ENPs) used as catalysts for internal combustion and oil cracking processes. The potential storage of these ENPs or their biotransformed products in edible/reproductive organs of crop plants can allow them to enter the food chain and the next plant generation.

BL2-3, BL6-2c, BL7-3, BL10-2
February 2013
Theanne Schiros, Energy Frontier Research Center, Columbia University
N-doped graphene figure

Doping graphene with small amounts of another element such as nitrogen or boron enables scientists to "tune" its properties to make it more suitable for a variety of applications, such as contact material in solar cells. Determining the chemically distinct species and different bond types that result from of doping monolayer graphene – even sub-percent-level doping –can be done using the high energy resolution and tunable polarization and energy of synchrotron light such as provided by SSRL.

 

BL10-1, BL13-2
January 2013
Neisseria cover

Of the 11 species of Neisseria bacteria that colonize humans, 9 of them coexist peacefully with us. However, two can cause serious diseases N. gonorrhoeae, responsible for the sexually transmitted disease gonorrhea, and N. meningitidis, which causes septicemia and meningitis.  Commercially available vaccines exist for four of the five known disease-causing serogroups of N. meningitidis (A, B, C, Y, W135) but no vaccine exists to combat serogroup B (menB); nor is there a vaccine available against N. gonorrhoeae. One target for vaccine development against menB and N. gonorrhoeae is the iron transporters found on the pathogens’ surfaces.  Cut off their access to iron and these pathogens cannot survive.

Biological Small-angle X-ray Scattering (BioSAXS)
BL4-2
January 2013
Kathryn Hastie, The Scripps Research Institute, Erica Ollmann Saphire, The Scripps Research Institute
structure

Lassa virus is endemic in Western Africa, and is the most common cause of viral hemorrhagic fever, infecting an estimated 300,000-500,000 people annually. It is also the hemorrhagic fever most frequently transported out of Africa to the United States and Europe. Understanding the key proteins of Lassa virus and any Achilles’ Heels written into their protein structures will enable development of therapeutics for medical defense. Recent analysis of the crystal structure of the virus’ RNA binding domain done at SSRL may have revealed one promising area of vulnerability.

Macromolecular Crystallography
BL12-2
December 2012
Inna M. Vishik, Stanford University, Z. X. Shen, Stanford University
Fig 1. Fermi surface and superconducting gap

Although the behavior of conventional superconductors has been explained via the BCS theory, the mechanism of superconductivity in the cuprate high temperature superconductors remains unresolved. One approach to this problem is to explore the phases next to superconductivity on the temperature-doping phase diagram. The pseudogap phase above Tc has been a particular stumbling block because it is not a Fermi liquid as with conventional superconductors.

There has been increasing evidence that the pseudogap phase is distinct from superconductivity and persists below Tc, and not simply  a precursor to superconductivity.  In a study recently published in PNAS, researchers at SSRL Beam Line 5-4 and Stanford explored the full doping, temperature, and momentum dependence of spectral gaps in the superconducting state of Bi2Sr2CaCu2O8+δ (Bi-2212) with unprecedented precision and completeness.

Angle-resolved photoelectron spectroscopy
BL5-4
December 2012
Burckhard Seelig, University of Minnesota, Ritimukta Sarangi, SSRL
Figure 1. Changes in3D structure upon directed evolution of the hRXRα scaffold to the artificial RNA ligase enzyme 10C.

In recent years, enzymes have gained an important role in industry as cheap and environmentally friendly alternatives to traditional chemical catalysts. Learning to create such enzymes from scratch is necessary in order to provide biocatalysts for the wealth of non-natural reaction chemistries and substrates that have emerged over the last century.

Until now this has been achieved only when extensive knowledge of the mechanism of the reaction is available. Recently, however, researchers have used a clever in vitro strategy to synthesize an artificial RNA ligase enzyme capable of a previously unknown catalytic activity, and to do so they began with a protein not associated with catalysis. A team of scientists led by Burckhard Seelig of the University of Minnesota have now determined the unique structure of this novel biocatalyst using NMR and synchrotron-based Zn K-edge EXAFS at SSRL's Beam Line 9-3

 

BL9-3
November 2012
Joy C. Andrews (SSRL), Bert M. Weckhuysen (Utrecht)
Figure 1

Olefins are the basic building blocks for many products from the petrochemical industry and are currently produced by steam cracking of naphtha or ethane, but increasing oil and gas prices are driving the industry toward producing olefins from syngas derived from cheaper feedstocks via the Fischer-Tropsch process instead. A team of scientists used full-field Transmission hard X-ray Microscopy (TXM) and a special reactor designed and built at SSRL and installed on SSRL Beam Line 6-2 to learn more about the catalyst at the heart of the Fischer-Tropsch-to-Olefins (FTO) process.

BL6-2

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