2013 Publications | Stanford Synchrotron Radiation Lightsource

Journal Papers

T. A. Addington, R. W. Mertz, J. B. Siegel, J. M. Thompson, A. J. Fisher, V. Filkov, N. M. Fleischman, A. A. Suen, C. Zhang and M. D. Toney, "Janus: Prediction and Ranking of Mutations Required for Functional Interconversion of Enzymes", J. Mol. Biol. 425, 1378 (2013) doi: 10.1016/j.jmb.2013.01.034
N. B. Aetukuri, A. X. Gray, M. Drouard, M. Cossale, L. Gao, A. H. Reid, R. Kukreja, H. Ohldag, C. A. Jenkins, E. Arenholz, K. P. Roche, H. A. Dürr, M. G. Samant and S. S. P. Parkin, "Control of the Metal-Insulator Transition in Vanadium Dioxide by Modifying Orbital Occupancy", Nat. Phys. 9, 661 (2013) doi: 10.1038/NPHYS2733
H. S. Ahn, J. Yano and T. D. Tilley, "Photocatalytic Water Oxidation by Very Small Cobalt Domains on a Silica Surface", Energ. Environ. Sci. 6, 3080 (2013) doi: 10.1039/C3EE42067A
H. B. Akkerman, S. C. B. Mannsfeld, A. P. Kaushik, E. Verploegen, L. Burnier, A. P. Zoombelt, J. D. Saathoff, S. Hong, S. Atahan-Evrenk, X. Liu, A. Aspuru-Guzik, M. F. Toney, P. Clancy and Z. Bao, "Effects of Odd–Even Side Chain Length of Alkyl-Substituted Diphenylbithiophenes on First Monolayer Thin Film Packing Structure", J. Am. Chem. Soc. 135, 11006 (2013) doi: 10.1021/ja400015e
J. Amoroso, J. Marra, S. D. Conradson, M. Tang and K. Brinkman, "Melt Processed Single Phase Hollandite Waste Forms for Nuclear Waste Immobilization: Ba_1.0Cs_0.3A_2.3Ti_5.7O₁₆; A = Cr, Fe, Al", J. Alloys Compd. 584, 590 (2013) doi: 10.1016/j.jallcom.2013.09.087
C. W. N. Anderson, S. M. Bhatti, J. Gardea-Torresdey and J. Parsons, "In Vivo Effect of Copper and Silver on Synthesis of Gold Nanoparticles inside Living Plants", ACS Sustainable Chem. Eng. 1, 640 (2013) doi: 10.1021/sc400011s
M. Anderson, E. P. Schultz, M. Martick and W. G. Scott, "Active-site Monovalent Cations Revealed in a 1.55 Å Resolution Hammerhead Ribozyme Structure", J. Mol. Biol. 425, 3790 (2013), doi: 10.1016/j.jmb.2013.05.017
J. C. Andrews and B. M. Weckhuysen, "Hard X-ray Spectroscopic Nano-Imaging of Hierarchical Functional Materials at Work", ChemPhysChem 14, 3655 (2013) doi 10.1002/cphc.201300529
L. D. Andrews, T. D. Fenn and D. Herschlag, "Ground State Destabilization by Anionic Nucleophiles Contributes to the Activity of Phosphoryl Transfer Enzymes", PLOS Biology 11, e1001599 (2013) doi: 10.1371/journal.pbio.1001599
G. N. Ankah, S. Meimandi and F. U. Renner, "Dealloying of Cu₃Pd Single Crystal Surfaces", J. Electrochem. Soc. 160, C390 (2013) doi: 10.1149/2.079308jes
Y. Arai and K. J. Livi, "Underassessed Phosphorus Fixation Mechanisms in Soil Sand Fraction", Geoderma 192, 422 (2013) doi: 10.1016/j.geoderma.2012.06.021
L. R. Aramburo, Y. Liu, T. Tyliszczak, F. M. F. de Groot, J. C. Andrews and B. M. Weckhuysen, "3D Nanoscale Chemical Imaging of the Distribution of Aluminum Coordination Environments in Zeolites with Soft X-ray Microscopy", ChemPhysChem 14, 496 (2013) doi: 10.1002/cphc.201201015
V. Armel, J. Rivnay, G. Malliaras and B. Winther-Jensen, "On the Unexpected Interaction between PEDOT and Phosphornium Ionic Liquids", J. Am. Chem. Soc. 135, 11309 (2013) doi: 10.1021/ja405032c
R. S. Ashraf, B. C. Schroeder, H. A. Bronstein, Z. Huang, S. Thomas, R. J. Kline, C. J. Brabec, P. Rannou, T. D. Anthopoulos and J. R. Durrant, "The Influence of Polymer Purification on Photovoltaic Device Performance of a Series of Indacenodithiophene Donor Polymers", Adv. Mater. 25, 2029 (2013) doi: 10.1002/adma.201300027
S. Aspeslagh, M. Nemčovič, N. Pauweis, K. Venken, J. Wang, S. Van Calenbergh, D. M. Zajonc and D. Elewaut, "Enhanced TCR Footprint by a Novel Glycolipid Increases NKT-Dependent Tumor Protection", J. Immunol. 191, 2916 (2013) doi: 10.4049/?jimmunol.1203134
K. Awwad, A. Desai, C. Smith and M. Sommerhalter, "Structural and Functional Characterization of a Noncanonical Nucleoside Triphosphate Pyrophosphatase from Thermotoga maritima", Acta Crystallogr. D 69, 184 (2013) doi: 10.1107/S0907444912044630
C. Aydin, A. Kulkarni, M. Chi, N. D. Browning and B. C. Gates, "Three-Dimensional Structural Analysis of MgO-Supported Osmium Clusters by Electron Microscopy with Single-Atom Sensitivity", Angew. Chem., Int. Ed. Engl. 52, 5262 (2013) doi: 10.1002/anie.201300238
W. E. Bailey, C. Cheng, R. Knut, O. Karis, S. Auffret, S. Zohar, D. Keavney, P. Warnicke, J.-S. Lee and D. A. Arena, "Detection of Microwave Phase Variation in Nanometre-scale Magnetic Heterostructures", Nat. Commun. 4, 2025 (2013) doi: 10.1038/ncomms3025
S. R. Barberie, T. A. Cahill, C. F. Cahill, T. M. Cahill, C. R. Iceman and D. E. Barnes, "UC Davis XIPline ("zipline") End-Station at the Stanford Synchrotron Radiation Lightsource: Development and Experimental Results", Nucl. Instrum. Meth. Phys. Res. A 729, 930 (2013) doi: 10.1016/j.nima.2013
J. R. Bargar, K. H. Williams, K. M. Campbell, P. E. Long, J. E. Stubbs, E. I. Suvorova, J. S. Lezama-Pacheco, D. S. Alessi, M. Stylo, S. M. Webb, J. A. Davis, D. E. Giammar, L. Y. Blue and R. Bernier-Latmani, "Uranium Redox Transition Pathways in Acetate-amended Sediments", Proc. Natl. Acad. Sci. USA 110, 4506 (2013) doi: 10.1073/pnas.1219198110
I. H. Barrette-Ng, S.-C. Wu, W.-M. Tjia, S.-L. Wong and K. K. S. Ng, "The Structure of the SBP-Tag-Streptavidin Complex Reveals a Novel Helical Scaffold Bridging Binding Pockets on Separate Subunits", Acta Crystallogr. D 69, 879 (2013) doi: 10.1107/S0907444913002576
J. A. Bartelt, Z. M. Beiley, E. T. Hoke, W. R. Mateker, J. D. Douglas, B. A. Collins, J. R. Tumbleston, K. R. Graham, A. Amassian, H. Ade, J. M. J. Fréchet, M. F. Toney and M. D. McGehee, "The Importance of Fullerene Percolation in the Mixed Regions of Polymer-Fullerene Bulk Heterojunction Solar Cells", Adv. Eng. Mater. 3, 364 (2013) doi: 10.1002/aenm.201200637
D. Batabyal, H. Li and T. L. Poulos, "Synergistic Effects of Mutations in Cytochrome P450cam Designed to Mimic CYP101D1", Biochemistry 52, 5396 (2013) doi: 10.1021/bi400676d
D. Batabyal and T. L. Poulos, "Crystal Structures and Functional Characterization of Wild-Type CYP101D1 and Its Active Site Mutants", Biochemistry 52, 8898 (2013) doi: 10.1021/bi401330c
E. L. Baxter, J. A. Zuris, C. Wang, P. L. T. Vo, H. L. Axelrod, A. E. Cohen, M. L. Paddock, R. Nechushtai, J. N. Onuchic and P. A. Jennings, "Allosteric Control in a Metalloprotein Dramatically Alters Function", Proc. Natl. Acad. Sci. USA 110, 948 (2013) DOI: 10.1073/pnas.1208286110
E. C. Benson, M. D. Sampson, K. A. Grice, J. M. Smieja, J. D. Froehlich, D. Friebel, J. A. Keith, E. A. Carter, A. Nilsson and C. P. Kubiak, "The Electronic States of Rhenium Bipyridyl Electrocatalysts for CO₂ Reduction as Revealed by X-ray Absorption Spectroscopy and Computational Quantum Chemistry", Angew. Chem., Int. Ed. Engl. 52, 4841 (2013) doi: 10.1002/anie.201209911
M. Beye, T. Anniyev, R. Coffee, M. Dell'Angela, A. Föhlisch, J. Gladh, T. Katayama, S. Kaya, O. Krupin, A. Mogelhoj, A. Nilsson, D. Nordlund, J. K. Nrskov, H. Öberg, H. Ogasawara, L. G. M. Pettersson, W. F. Schlotter, J. A. Sellberg, F. Sorgenfrei, J. J. Turner, M. Wolf, W. Wurth and H. Öström, "Selective Ultrafast Probing of Transient Hot Chemisorbed and Precursor States of CO on Ru(0001)", Phys. Rev. Lett. 110, 186101 (2013) doi: 10.1103/PhysRevLett.110.186101
M. Bhattacharya, M. Toth, C. A. Smith and S. B. Vakulenko, "Bulky "Gatekeeper" Residue Changes the Co-Substrate Specificity in Aminoglycoside 2"-Phosphotransferase IIa", Antimicrob. Agents Ch. 57, 3763 (2013) doi: 10.1128/AAC.00381-13
Y. Bi, S. P. Hyun, R. Kukkadapu and K. F. Hayes, "Oxidative Dissolution of UO₂ in a Simulated Groundwater Containing Synthetic Nanocrystalline Mackinawite", Geochim. Cosmochim. Acta 102, 175 (2013) doi: 10.1016/j.gca.2012.10.032
H. Bie, J. Yin, X. He, A. R. Kermode, E. D. Goddard-Borger, S. G. Withers and M. N. G. James, "Insights into Mucopolysaccharidosis I from the Structure and Action of α-L-iduronidase", Nat. Chem. Biol. 9, 739 (2013) doi: 10.1038/nchembio.1357
E. A. Blaber, N. Dvorochkin, C. Lee, J. S. Alwood, R. Yousuf, P. Pianetta, R. K. Globus, B. P. Burns and E. A. C. Almeida, "Microgravity Induces Pelvic Bone Loss through Osteoclastic Activity, Osteocytic Osteolysis, and Osteoblastic Cell Cycle Inhibition by CDKN1a/p21", PLoS One 8, e61372 (2013) doi: 10.1371/journal.pone.0061372
J. A. Blair, Q. Xu, W. S. Childers, I. I. Mathews, J. W. Kern, M. Eckart, A. M. Deacon and L. Shapiro, "Branched Signal Writing of an Essential Bacterial Cell-Cycle Phosphotransfer Protein", Structure 21, 1590 (2013) doi: 10.1016/j.str.2013.06.024
L. K. Blusch, K. E. Craigo, V. Martin-Diaconescu, E. Bill, A. B. McQuarters, S. Dechert, S. DeBeer, N. Lehnert and F. Meyer, "Hidden Non-Innocence in an Expanded Porphyrin: Electronic Structure of the Siamese-Twin Porphyrin’s Dicopper Complex in Different Oxidation States", J. Am. Chem. Soc. 135, 13892 (2013) doi: 10.1021/ja406176e
U. Boesenberg, F. Meirer, Y. Liu, A. K. Shukla, R. Dell'Anna, T. Tyliszczak, G. Chen, J. C. Andrews, T. J. Richardson, R. Kostecki and J. Cabana, "Mesoscale Phase Distribution in Single Particles of LiFePO₄ Following Lithium Deintercalation", Chem. Mater. 25, 1664 (2013) doi: 10.1021/cm400106k
J. A. Bogart, A. J. Lewis, S. A. Medling, N. A. Piro, P. J. Carroll, C. H. Booth and E. J. Schelter, "Homoleptic Cerium(III) and Cerium(IV) Nitroxide Complexes: Significant Stabilization of the 4+ Oxidation State", Inorg. Chem. 52, 11600 (2013) doi: 10.1021/ic401974t
C. H. Booth, Y. Jiang, S. A. Medling, D. L. Wang and A. L. Costello, "Self-Irradiation Damage to the Local Structure of Plutonium and Plutonium Intermetallics", J. Appl. Phys. 113, 0935201 (2013) doi: 10.1063/1.4794016
Z. A. Bornholdt, T. Noda, D. M. Abelson, P. Halfmann, M. R. Wood, Y. Kawaoka and E. O. Saphire, "Structural Rearrangement of Ebola Virus VP40 Begets Multiple Functions in the Virus Life Cycle", Cell 154, 763 (2013) doi: 10.1016/j.cell.2013.07.015
A. C. Bowman, J. England, S. Sproules, T. Weyhermüller and K. Wieghardt, "Electronic Structures of Homoleptic [Tris(2,2'-bipyridine)M]ⁿ Complexes of the Early Transition Metals (M = Sc, Y, Ti, Zr, Hf, V, Nb, Ta; n = 1+, 0, 1–, 2–, 3-): An Experimental and Density Functional Theoretical Study", Inorg. Chem. 52, 2242 (2013) doi: 10.1021/ic302799s
T. P. Brennan, J. T. Tanskanen, J. R. Bakke, W. H. Nguyen, D. Nordlund, M. F. Toney, M. D. McGehee, A. Sellinger and S. Bent, "Dynamical Orientation of Large Molecules on Oxide Surfaces and Its Implications for Dye-Sensitized Solar Cells", Chem. Mater. 25, 4354 (2013) doi: 10.1021/cm402609k
S. Brinkmann-Chen, T. Flock, J. K. B. Cahn, C. D. Snow, E. M. Brustad, J. A. McIntosh, P. Meinhold, L. Zhang and F. H. Arnold, "General Approach to Reversing Ketol-Acid Reductoisomerase Cofactor Dependence from NADPH to NADH", Proc. Natl. Acad. Sci. USA 110, 10946 (2013) doi: 10.1073/pnas.1306073110
G. R. Brock, G. Kim, A. R. Ingraffea, J. C. Andrews, P. Pianetta and M. C. H. van der Meulen, "Nanoscale Examination of Microdamage in Sheep Cortical Bone Using Synchrotron Radiation Transmission X-ray Microscopy", PLoS One 8, e57942 (2013) doi: 10.1371/journal.pone.0057942
J. Brock, P. G. Board and A. J. Oakley, "Structural Insights into Omega-Class Glutathione Transferases: A Snapshot of Enzyme Reduction and Identification of a Non-Catalytic Ligandin Site", PLoS One 8, e60324 (2013) doi: 10.1371/journal.pone.0060324
C. N. Butterfield, A. V. Soldatova, S.-W. Lee, T. G. Spiro and B. M. Tebo, "Mn(II,III) Oxidation and MnO₂ Mineralization by an Expressed Bacterial Multicopper Oxidase", Proc. Natl. Acad. Sci. USA 110, 11731 (2013) doi: 10.1073/pnas.1303677110
C. Cabanetos, A. El Labban, J. A. Bartelt, J. D. Douglas, W. R. Mateker, J. M. J. Frechet, M. D. McGeehee and P. M. Beaujuge, "Linear Side Chains in Benzo[1,2-b:4,5-b']dithiophene-Thieno[3,4-c]pyrrole-4,6-dione Polymers Direct Self-Assembly and Solar Cell Performance", J. Am. Chem. Soc. 135, 4656 (2013) doi: 10.1021/ja400365b
S. Caner, N. Nguyen, A. Aguda, R. Zhang, Y. T. Pan, S. G. Withers and G. D. Brayer, "The Structure of the Mycobacterium smegmatis Trehalose Synthase (TreS) Reveals an Unsual Active Site Configuration and Acarbose Binding Mode", Glycobiology 23, 1075 (2013) doi: 10.1093/glycob/cwt044
S. Carrasco-Gil, H. Siebner, D. L. LeDuc, S. M. Webb, R. Millan, J. C. Andrews and L. E. Hernandez, "Mercury Localization and Speciation in Plants Grown Hydroponically or in a Natural Environment", Environ. Sci. Technol. 47, 3082 (2013) doi: 10.1021/es303310t
K. H. Cats, I. D. Gonzalez-Jimenez, Y. Liu, J. Nelson, D. van Campen, F. Meirer, A. M. J. van der Eerden, F. M. F. de Groot, J. C. Andrews and B. M. Weckhuysen, "X-ray Nanoscopy of Cobalt Fischer-Tropsch Catalysts at Work", Chem. Commun. 49, 4622 (2013) doi: 10.1039/C3CC00160A
J. M. Cerrato, M. N. Ashner, D. S. Alessi, J. S. Lezama-Pacheco, R. Bernier-Latmani, J. R. Bargar and D. E. Giammar, "Relative Reactivity of Biogenic and Chemogenic Uraninite and Biogenic Noncrystalline U(IV)", Environ. Sci. Technol. 47, 8557 (2013) doi: 10.1021/es401663t
P. Chandrasekaran, K. P. Chiang, D. Nordlund, U. Bergmann, P. L. Holland and S. DeBeer, "Sensitivity of X-ray Core Spectroscopy to Changes in Metal Ligation: A Systematic Study of Low-Coordinate, High-Spin Ferrous Complexes", Inorg. Chem. 52, 6286 (2013) doi: 10.1021/ic3021723
F.-A. Chao, A. Morelli, J. C. Haugner, III, L. Churchfield, L. N. Hagmann, L. Shi, L. R. Masterson, R. Sarangi, G. Veglia and B. Seeling, "Structure and Dynamics of a Primordil Catalytic Fold Generated by in vitro Evolution", Nat. Chem. Biol. 9, 81 (2013) doi: 10.1038/nchembio.1138
M. Chavarha, R. W. Loney, S. B. Rananavare and S. B. Hall, "An Anionic Phospholipid Enables the Hydrophobic Surfactant Proteins to Alter Spontaneous Curvature", Biophys. J. 104, 594 (2013) doi: 10.1016/j.bpj.2012.12.041
C. Chen, C. Huang, I. Waluyo, D. Nordlund, T.-C. Weng, D. Sokaras, T. Weiss, U. Bergmann, L. G. M. Pettersson and A. Nilsson, "Solvation Structures of Protons and Hydroxide Ions in Water", J. Chem. Phys. 138, 154506 (2013) doi: 10.1063/1.4801512
M. S. Chen, O. P. Lee, J. R. Niskala, A. T. Yiu, C. J. Tassone, K. Schmidt, P. M. Beaujuge, S. S. Onishi, M. F. Toney, A. Zettl and J. M. J. Fréchet, "Enhanced Solid-State Order and Field-Effect Hole Mobility through Control of Nanoscale Polymer Aggregation", J. Am. Chem. Soc. 135, 19229 (2013) doi: 10.1021/ja4088665
M. S. Chen, J. R. Niskala, D. A. Unruh, C. K. Chu, O. P. Lee and J. M. J. Fréchet, "Control of Polymer-Packing Orientation in Thin Films through Synthetic Tailoring of Backbone Coplanarity", Chem. Mater. 25, 4088 (2013) doi: 10.1021/cm402489a
W.-C. Chen, Y.-F. Song, C.-C. Wang, Y. Liu, D. T. Morris, P. A. Pianetta, J. C. Andrews, H.-C. Wu and N.-L. Wu, "Study on the Synthesis-Microstructure-Performance Relationship of Layered Li-Excess Nickel-Manganese Oxide as a Li-ion Battery Cathode Prepared by High-Temperature Calcination", J. Mater. Chem. A 1, 10847 (2013) doi: 10.1039/C3TA11716B
Y. L. Chen, M. Kanou, Z. K. Liu, H. J. Zhang, J. A. Sobota, D. Leuenberger, S. K. Mo, B. Zhou, S.-L. Yang, P. S. Kirchmann, D. H. Lu, R. G. Moore, Z. Hussain, Z. X. Shen, X. L. Qi and T. Sasagawa, "Discovery of a Single Topological Dirac Fermion in the Strong Inversion Asymmetric Compound BiTeCl", Nat. Phys. 9, 704 (2013) doi: 10.1038/nphys2768
J. Cho, H. Y. Kang, L. V. Liu, R. Sarangi, E. I. Solomon and W. Nam, "Mononuclear Nickel(II)-Superoxo and Nickel(III)-Peroxo Complexes Bearing a Common Macrocyclic TMC Ligand", Chem. Sci. 4, 1502 (2013) doi: 10.1039/c3sc2
M. L.-H. Chu, V. E. Ahn, H.-J. Choi, D. L. Daniels, R. Nusse and W. I. Weis, "Structural Studies of Wnts and Identification of an LRP6 Binding Site", Structure 21, 1235 (2013) doi: 10.1016/j.str.2013.05.006
Y. D. Chuang, W. S. Lee, Y. F. Kung, A. P. Sorini, B. Moritz, R. G. Moore, L. Patthey, M. Trigo, D. H. Lu, P. S. Kirchmann, M. Yi, O. Krupin, M. Langner, Y. Zhu, S. Y. Zhou, D. A. Reis, N. Huse, J. S. Robinson, R. A. Kaindl, R. W. Schoenlein, S. L. Johnson, M. Forst, D. Doering, P. Denes, W. F. Schlotter, J. J. Turner, T. Sasagawa, Z. Hussain, Z. X. Shen and T. P. Devereaux, "Real-Time Manifestation of Strongly Coupled Spin and Charge Order Parameters in Stripe-ordered Nicelates via Time-resolved Resonant X-ray Diffraction", Phys. Rev. Lett. 110, 127404 (2013) doi: 10.1103/PhysRevLett.110.127404
Y. Ciribilli, P. Monti, A. Bisio, H. T. Nguyen, A. S. Ethayathulla, A. Ramos, G. Foggetti, P. Menichini, D. Menendez, M. A. Resnick, H. Viadiu, G. Fronza and A. Inga, "Transactivation Specificity is Conserved among p53 Family Proteins and Depends on a Response Element Sequence Code", Nucleic Acids Res. 41, 8637 (2013) doi: 10.1093/nar/gkt657
A. C. Cismasu, C. Levard, F. M. Michel and G. E. Brown, Jr., "Properties of Impurity-Bearing Ferrihydrite II: Insights into the Surface Structure and Composition of Pure, Al- and Si-Bearing Ferrihydrite from Zn(II) Sorption Experiments and Zn K-edge X-ray Absorption Spectroscopy", Geochim. Cosmochim. Acta 119, 46 (2013) doi: 10.1016/j.gca.2013.05.040
A. P.-Z. Clark, C. Shi, B. C. Ng, J. N. Wilking, A. L. Ayzner, A. Z. Stieg, B. J. Schwartz, T. G. Mason, Y. Rubin and S. H. Tolbert, "Self-assembling Semiconducting Polymers-Rods and Gels from Electronic Materials", ACS Nano 7, 962 (2013) doi: 10.1021/nn304437k
D. L. Clark, S. D. Conradson, R. J. Donohoe, P. L. Gordon, D. W. Keogh, P. D. Palmer, B. L. Scott and C. D. Tait, "Chemical Speciation of Neptunium(VI) under Strongly Alkaline Conditions. Structure, Composition, and Oxo Ligand Exchange", Inorg. Chem. 52, 3547 (2013) doi: 10.1021/ic3020139
J. E. Cochran, E. Amir, K. Sivanandan, S.-Y. Ku, J. H. Seo, B. A. Collins, J. R. Tumbleston, M. F. Toney, H. Ade, C. J. Hawker and M. L. Chabinyc, "Synthesis, Solid-State, and Charge-Transport Properties of Conjugated Polythiophene-S,S-dioxides", J. Polym. Sci. B 51, 48 (2013) doi: 10.1002/polb.23167
V. Cody, J. Pace, S. F. Queener, O. O. Adair and A. Gangjee, "Kinetic and Structural Analysis for Potent Antifolate Inhibition of Pneumocystis jirovecii, Pneumocystis carinii and Human Dihydrofolate Reductase (DHFR) and Their Active Site Variants", Antimicrob. Agents Ch. 57, 2669 (2013) doi: 10.1128/?AAC.00172-13
P. Coggill, R. Y. Eberhardt, R. D. Finn, Y. Chang, L. Jaroszewski, A. Godzik, D. Das, Q. Xu, H. L. Axelrod, L. Aravind, A. G. Murzin and A. Bateman, "Two Pfam Protein Families Characterized by a Crystal Structure of Protein lpg2210 from Legionella pneumophila", BMC Bioinformatics 14, 265 (2013) doi: 10.1186/1471-2105-14-265
K. N. Colbert, D. A. Hattendorf, T. M. Weiss, P. Burkhardt, D. Fasshauer and W. I. Weis, "Syntaxin 1a Variants Lacking an N-peptide or Bearing the LE Mutation Bind to Munc18a in a Closed Conformation", Proc. Natl. Acad. Sci. USA 110, 12637 (2013) doi: 10.1073/pnas.1303753110
B. P. Colman, C. L. Arnaout, S. Anciaux, C. K. Gunsch, M. F. Hochella, Jr., B. Kim, G. V. Lowry, B. M. McGill, B. C. Reinsch, C. J. Richardson, J. M. Unrine, J. P. Wright, L. Yin and E. S. Bernhardt, "Low Concentrations of Silver Nanoparticles in Biosolids Cause Adverse Ecosystem Responses under Realistic Field Scenario", PLoS One 8, e57189 (2013) doi: 10.1371/journal.pone.0057189
S. Connelly, J. K. DeMartino, D. L. Boger and I. A. Wilson, "Biological and Structural Evaluation of 10R- and 10S-Methylthio-DDACTHF Reveals a New Role for Sulfur in Inhibition of Glycinamide Ribonucleotide Transformylase", Biochemistry 52, 5133 (2013) doi: 10.1021/bi4005182
S. T. Connor, B. D. Weil, S. Misra, Y. Cui and M. F. Toney, "Behaviors of Fe, Zn, and Ga Substitution in CuInS₂ Nanoparticles Probed with Anomalous X-ray Diffraction", Chem. Mater. 25, 320 (2013) doi: 10.1021/cm302794t
S. D. Conradson, T. Durakiewicz, F. J. Espinosa-Faller, Y. Q. An, D. A. Andersson, A. R. Bishop, K. S. Boland, J. A. Bradley, D. D. Byler, D. L. Clark, D. R. Conradson, L. L. Conradson, A. L. Costello, N. J. Hess, G. H. Lander, A. Llobet, M. B. Martucci, J. Mustre de Leon, D. Nordlund, J. S. Lezama-Pacheco, T. E. Proffen, G. Rodriguez, D. E. Schwarz, G. T. Seidler, A. J. Taylor, S. A. Trugman, T. A. Tyson and J. A. Valdez, "Possible Bose-condensate Behavior in a Quantum Phase Originating in a Collective Excitation in the Chemically and Optically Doped Mott-Hubbard System UO_2+x", Phys. Rev. B 88, 115135 (2013) doi: 10.1103/PhysRevB.88.115135
R.-M. Couture, D. Wallschläger, J. Rose and Van Cappellen, "Arsenic Binding to Organic and Inorganic Sulfur Species during Microbial Sulfate Reduction: A Sediment Flow-through Reactor Experiment", Environ. Chem. 10, 285 (2013) doi: 10.1071/EN13010
R. Cox, T. J. Green, S. Purushotham, C. Deivanayagam, G. J. Bedwell, P. E. Prevelige and M. Luo, "Structural and Functional Characterization of the Mumps Virus Phosphoprotein", J. Virol. 87, 7558 (2013) doi: 10.1128/JVI.00653-13
J. N. Cross, P. M. Duncan, E. M. Villa, M. J. Polinski, J.-M. Babo, E. V. Alekseev, C. H. Booth and T. E. Albrecht-Schmitt, "From Yellow to Black: Dramatic Changes between Cerium(IV) and Plutonium(IV) Molybdates", J. Am. Chem. Soc. 135, 2769 (2013) doi: 10.1021/ja311910h
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F. Zhang, Y. Hu, T. Schuettfort, C.-a. Di, X. Gao, C. R. McNeill, L. Thomsen, S. C. B. Mannsfeld, W. Yuan, H. Sirringhaus and D. Zhu, "Critical Role of Alkyl Chain Branching of Organic Semiconductors in Enabling Solution-Processed N-Channel Organic Thin-Film Transistors with Mobility of up to 3.50 cm² V^-1 s^-1", J. Am. Chem. Soc. 135, 2338 (2013) doi: 10.1021/ja311469y
L. Zhang, N. S. Colella, F. Liu, S. Trahan, J. K. Baral, H. H. Winter, S. C. B. Mannsfeld and A. L. Briseno, "Synthesis, Electronic Structure, Molecular Packing/Morphology Evolution, and Carrier Mobilities of Pure Oligo-/Poly(alkylthiophenes)", J. Am. Chem. Soc. 135, 844 (2013) doi: 10.1021/ja3104796
L. Zhang, J. T. Kaiser, G. Meloni, K.-Y. Yang, T. Spatzal, S. L. A. Andrade, O. Einsle, J. B. Howard and D. C. Rees, "The Sixteenth Iron in the Nitrogenase MoFe Protein", Angew. Chem., Int. Ed. Engl. 52, 10529 (2013) doi: 10.1002/ange.201303877
X. Zhang, H. Bronstein, A. J. Kronemeijer, J. Smith, Y. Kim, R. J. Kline, L. J. Richter, T. D. Anthopoulos, H. Sirringhaus, K. Song, M. Heeney, W. Zhang, I. McCulloch and D. M. DeLongchamp, "Molecular Origin of High Field-Effect Mobility in an Indacenodithiophene-Benzothiadiazole Copolymer", Nat. Commun. 4, 2238 (2013) doi: 10.1038/ncomms3238
Y. Zhang, L. Zhou, L. Rouge, A. H. Phillips, C. Lam, P. Liu, W. Sandoval, E. Helgason, J. M. Murray, I. E. Wertz and J. E. Corn, "Conformational Stabilization of Ubiquitin Yields Potent and Selective Inhibitors of USP7", Nat. Chem. Biol. 9, 51 (2013) doi: 10.1038/nchembio.1134
H. Zhao, T. E. Christensen, Y. N. Kamau and L. Tang, "Structures of the Phage Sf6 Large Terminase Provide New Insights into DNA Translocation and Cleavage", Proc. Natl. Acad. Sci. USA 110, 8075 (2013) doi: 10.1073/pnas.1301133110
L. Zhao, M. Levendorf, S. Goncher, T. Schiros, L. Pálova, A. Zabet-Khosousi, K. T. Rim, C. Gutiérrez, D. Nordlund, C. Jaye, M. Hybertsen, D. Reichman, G. W. Flynn, J. Park and A. N. Pasupathy, "Local Atomic and Electronic Structure of Boron Chemical Doping in Monolayer Graphene", Nano Lett. 13, 4659 (2013) doi: 10.1021/nl401781d
L. Zhao, Y. Sun, J. A. Hernandez-Viezcas, A. D. Servin, J. Hong, G. Niu, J. R. Peralta-Videa, M. Duarte-Gardea and J. L. Gardea-Torresdey, "Influence of CeO₂ and ZnO Nanoparticles on Cucumber Physiological Markers and Bioaccumulation of Ce and Zn: A Life Cycle Study", J. Agric. Food Chem. 61, 11945 (2013) doi: 10.1021/jf404328e
L. Zhao, W. D. Tolbert, B. Ericksen, C. Zhan, X. Wu, W. Yuan, X. Li, M. Pazgier and W. Lu, "Single, Double and Quadruple Alanine Substitutions at Oligomeric Interfaces Identify Hydrophobicity as the Key Determinant of Human Neutrophil Alpha Defensin HNP1 Function", PLoS One 8, e78937 (2013) doi: 10.1371/journal.pone.0078937
W. Zheng, H. Nichol, S. Liu, Y.-C. N. Cheng and E. M. Haacke, "Measuring Iron in the Brain Using Quantitative Susceptibility Mapping and X-ray Fluorescence Imaging", Neurolmage 78, 68 (2013) doi: 10.1016/j.neuroimage.2013.04.022
C. Zhong, J. Wang, B. Li, H. Xiang, M. Ultsch, M. Coons, T. Wong, N. Y. Chiang, S. Clark, R. Clark, L. Qintana, P. Gribling, E. Suto, K. Barck, R. Corpuz, J. Yao, R. Takkar, W. P. Lee, L. A. Damico-Beyer, R. D. Carano, C. Adams, R. F. Kelley, W. Wang and N. Ferrara, "Development and Preclinical Characterization of a Humanized Antibody Targeting CXC12", Clin. Cancer Res. 19, 4433 (2013) doi: 10.1158/1078-0432.CCR-13-094L3
H. Zhou, L. Sun, X.-L. Yang and P. Schimmel, "ATP-directed Capture of Bioactive Herbal-based Medicine on Human tRNA Synthetase", Nature 494, 121 (2013) doi: 10.1038/nature11774
H. Zhou, M. F. Toney and S. F. Bent, "Cross-Linked Ultrathin Polyurea Films via Molecular Layer Deposition", Macromolecules 46, 5638 (2013) doi: 10.1021/ma400998m
J. Zhou, L. Lancaster, J. P. Donohue and H. F. Noller, "Crystal Structures of EF-G-Ribosome Complexes Trapped in Intermediate States of Translocation", Science 340, 1236086 (2013) doi: 10.1126/science.1236086
M. Zhu, B. W. Puls, C. Frandsen, J. D. Kubricki, H. Zhang and G. A. Waychunas, "In Situ Structural Characterization of Ferric Iron Dimers in Aqueous Solutions: Identification of μ-Oxo Species", Inorg. Chem. 52, 6788 (2013) doi: 10.1021/ic302053w
X. Zhu, Y.-H. Guo, T. Jiang, Y.-D. Wang, K.-H. Chan, X.-F. Li, W. Yu, R. McBride, J. C. Paulson, K.-Y. Yuen, C.-F. Qin, X.-Y. Che and I. A. Wilson, "A Unique and Conserved Neutralization Epitope in H5N1 Influenza Viruses Identified by a Murine Antibody against the A/goose/Guangdong/1/96 Hemagglutinin", J. Virol. 87, 12619 (2013) doi: 10.1128/JVI.01577-13
E. L. Zielazinski, M. González-Guerrero, P. Subramanian, T. L. Stemmler, J. M. Arguello and A. C. Rosenzweig, "Sinorhizobium meliloti Nia is a P1B-5-ATPase Expressed in the Nodule during Plant Symbiosis and is Involved in Ni and Fe Transport", Metallomics 5, 1614 (2013) doi: 10.1039/C3MT00

Books & Conference Proceedings

F. Bridges, T. Keiber, S. Medling and B. C. Sales, "Unusual Distortions about Tl and Pb in PbTe:Tl", in International Conference on Defects in Insulating Materials (ICDIM (2012), Phys. Stat. Sol. C 10, 236 (2013) doi: 10.1002/pssc.201200478
T. Keiber, F. Bridges, R. E. Baumbach and M. B. Maple, "Local Distortions about Nd in NdO_s4Sb₁₂", in International Conference on Defects in Insulating Materials (ICDIM (2012), Phys. Stat. Sol. C 10, 250 (2013) doi: 10.1002/pssc.201200506
H. Laksmono, T. A. McQueen, J. A. Sellberg, C. Huang, N. D. Loh, R. G. Sierra, D. Starodub, D. Nordlund, M. Beye, D. P. Deponte, A. Martin, A. Barty, J. Feldkamp, S. Boutet, G. J. Williams, M. J. Bogan and A. Nilsson, "Probing Homogenous Ice Nucleation within Supercooled Bulk Water Droplet in "No Man's Land" with an Ultrafast X-ray Laser", AIP Conf. Proc.1527, 984 (2013)
J. R. I. Lee, M. Bagge-Hansen, T. M. Willey, R. W. Meulenberg, M. H. Nielsen, I. C. Tran and T. van Buuren, "X-ray Absorption Spectroscopy for the Structural Investigation of Self-Assembled-Monolayer-Directed Mineralization", in J. J. De Yoreo (ed.)., Methods in Enzymology, Elsevier, 532, , (2013), pp. 165-187
Y. Liu, K. H. Cats, J. Nelson Weker, J. C. Andrews, B. M. Weckhuysen and P. Pianetta, "Data-Processing Strategies for Nano-tomography with Elemental Specification", SPIE 8851, 88510A (2013) doi: 10.1117/12.2026436
G. Lucovsky, J. W. Kim and D. Nordlund, "First Demonstration of Device-Quality Symmetric N-MOS and P-MOS Capacitors on P-type and N-type Crystalline Ge Substrates", Microelectron. Eng. 109, 370 (2013) doi: 10.1016/j.mee.2013.03.031
G. Lucovsky, J. Kim, K. Wu, D. Zeller, B. Papas and J. L. Whitten, "Non-Crystalline SiO₂: Processing Induced Pre-Existing Defects Associated with Vacated O-Atom Intrinsic Bonding Sites", Phys. Proc. 44, 99 (2013) doi: 10.1016/j.phpro.2013.04.013
G. Lucovsky, G. Parsons, D. Zeller, K. Wu, B. Papas, J. Whitten, R. Lujan and R. A. Street, "Spectroscopic Detection of Medium Range Order in Hydrogenated Amorphous Silicon, a-Si(H): Applications in Photovolatics, Thin Film Transistors and Si-based Microelectronics", Phys. Proc. 44, 91 (2013) doi: 10.1016/j.phpro.2013.04.012
G. Lucovsky, K. Wu, B. Pappas and J. Whitten, "Ligand Field Splittings in Core Level Transitions for Transition Metal (TM) Oxides: Tanabe-Sugano Diagrams and (TM) Dangling Bonds in Vacated O-atom Defects", J. Phys. Conf. Ser. 428, 012022 (2013) doi: 10.1088/1742-6596/428/1/012022
G. Lucovsky, D. Zeller, J. W. Kim and K. Wu, "Process Induced Pre-existing Defects in Non-crystalline SiO₂ and GeO₂ at Vacated O-atom Bonding Sites and Comparisons with Ge-S(Se) Alloy Bonding Sites", J. Phys. Conf. Ser. 428, 012017 (2013) doi: 10.1088/1742-6596/428/1/012017
J. Nelson, Y. Yang, S. Misra, J. C. Andrews, Y. Cui and M. F. Toney, "Identifying and Managing Radiation Damage during In Situ Transmission X-ray Microscopy of Li-ion Batteries", SPIE 8851, 88510B (2013) doi: 10.1117/12.2027263
J. F. Schmerge, J. Corbett, S. Gierman, R. Hettel, X. Huang, B. Johnson, S. Park, T. Rabedeau, J. Safranek, J. Sebek, K. Tian and Y. Yan, "SSRL Performance Enhancements", J. Phys. Conf. Ser. 425, 042011 (2013) doi: 10.1088/1742-6596/425/4/042011
A. Shavorskiy, A. Cordones, J. Vura-Weis, K. Siefermann, D. Slaughter, F. Sturm, F. Weise, H. Bluhm, M. Strader, H. Cho, M.-F. Lin, C. Bacellar, C. Khurmi, M. Hertlein, J. Guo, T. Tyliszczak, D. Prendergast, G. Coslovich, J. Robinson, R. A. Kaindl, R. W. Schoenlein, A. Belkacem, T. Weber, D. M. Neumark, S. R. Leone, D. Nordlund, H. Ogasawara, A. R. Nilsson, O. Krupin, J. J. Turner, W. F. Schlotter, M. R. Holmes, P. A. Heimann, M. Messerschmidt, M. Minitti, M. Beye, S. Gul, J. Z. Zhang, N. Huse and O. Gessner, "Time-Resolved X-ray Photoelectron Spectroscopy Techniques for Real-Time Studies of Interfacial Charge Transfer Dynamics", AIP Conf. Proc. 1525, 475 (2013)
B. Vega, J. C. Andrews, Y. Liu, J. Gelb and A. Kovscek, "Nanoscale Visualization of Gas Shale Pore and Textural Features", in Proc. Unvconventional Resources Technology Conference, Denver, CO, 12-14 August (2013)
Ph. Wernet, M. Beye, F. de Groot, S. Düsterer, K. Gaffney, S. Grübel, R. Hartsock, F. Hennies, I. Josefsson, B. Kennedy, K. Kunnus, T. Leitner, T. Mazza, M. Meyer, D. Nordlund, M. Odelius, W. Quevedo, P. Radcliffe, I. Rajkovic, B. Schlotter, M. Scholz, S. Schreck, E. Suljoti, S. Techert, J. Turner, C. Weniger, W. Zhang and A. Föhlisch, "Mapping Chemical Bonding of Reaction Intermediates with Femtosecond X-ray Laser Spectroscopy", EPJ Web of Conferences: XVIIIth International Conference on Ultrafast Phenomena 41, 05025 (2013) doi: 10.1051/epjconf/20134105025
L. Zhang, R. Barrett, K. Friedrich, P. Glatzel, T. Mairs, P. Marion, G. Monaco, C. Morawe and T. Weng, "Thermal Distortion Minimization by Geometry Optimization for Water-cooled White Beam Mirror or Multilayer Optics", J. Phys. Conf. Ser. 425, 052029 (2013) doi: 10.1088/1742-6596/425/5/052029