All lectures on Sunday, Monday and Tuesday will take place in the Redwood Rooms C & D (building 48). The practical tutorials will take place at different locations around the SSRL and experimental floor.
Sunday 24 April
8:30 - 9:15 Registration (Redwood rooms, building 48)
9:30 - 15:30 Crystallographic Fundamentals Course: Bob Sweet
12:00 Lunch (outside Redwood Rooms)
16:30 - 17:00 NX Client installation workshop: Thomas Eriksson (Redwood rooms, building 48)
17:30 - 19:30 Welcome Reception (Building 53)
Monday 25 April
7:45 - 8:15 Registration (Redwood Rooms)
8:30 Introduction to RapiData: Clyde Smith
8:45 Some issues in data collection: Bob Sweet
9:30 Cryo-crystallography and Radiation Damage: Enrique Rudiño
10:15 Coffee break
10:30: I've got a crystal, now what?: Jim Pflugrath
11:15 X-Ray sources: James Holton
12:00 Lunch
12:30 Autoindexing, integration and data reduction: Harry Powell
13:15 Data reduction with the HKL Suite: Maksymilian Chruszcz
14:00 Coffee break
14:15 Data collection at Free Electron Lasers: Nick Sauter
15:00 In situ optical spectroscopy: Aina Cohen
16:30-18:00 Orientation to experiments a>/Sample Preparation (Building 120)
18:15-19:30 Banquet dinner (Building 48)
Tuesday 26 April
9:00 Advanced area detectors: Mike Blum
9:45 Getting the best data from photon counting detectors: Andreas Foerster
10:30 Coffee break
10:45 SAD and MAD: Ana Gonzalez
11:30 Molecular Replacement: Raji Edayathumangalam
12:15 Lunch
12:45-13:00: Group picture
13:00 Sharp/Autosharp: Clemens Vonrhein
14:15 Solve and Phenix: Tom Terwilliger
15:00 Coffee break
15:15 Introduction to Small Angle Scattering: Thomas Weiss
16:15-18:00 Tour of LCLS
18:15 Dinner (Building 48)
19:30-21:30 Tutorials/Sample Preparation
Wednesday 27 April
10:30 Coffee served in BL9 lounge area
15:30 Coffee served in BL9 lounge area
Thursday 28 April
10:30 Coffee served in BL9 lounge area
15:30 Coffee served in BL9 lounge area
Friday 29 April
8:30-11:00 Recapitulation and final discussions The ending time is approximate (Building 48)
On Sunday, there will be an optional 30 minutes workshop to install and configure the NX client in the participants' laptops, and to learn how to access the data and demos in the practical tutorials.
Participants who do not attend the Sunday course and need help with the NX client, can contact the organizers to arrange a demo.
On Monday 25th, after the afternoon lectures, there will a compulsory orientation to experiments at SSRL, covering safety, at building 120. Participants will be split in two groups.
The group assignments can be found here.
On Monday 25th, between 17:00 and 18:00, Aina Cohen will do a demo on transferring frozen samples in cryovials to robot cassettes. Participants who have brought frozen samples in cryovials will get the chance to transfer them to SSRL cassettes during the demo or on Tuesday 26th, from 19:30
Participants with unfrozen samples (in crystallization plates or capillaries) can freeze them during the Sample freezing and mounting tutorial on BL7-1 (signup sheets will be available throught the course).
Sign up sheets for the optional tour of the free electron laser facility LCLS will be available on Monday. A group will set off from building 48 at ~ 16:00 (there is a ~15 minute walk to the LCLS), with a second group following 15 minutes later. The tour will include visits to the beamlines CXI and XPP (where most macromolecular crystallography experiments take place) and MFX, a new instrument in construction dedicated to serial crystallography. The tour takes about one hour and fifteen minutes.
There will be general data collection tutorials at BL9-2 and BL14-1 to learn how to set up data collections for different experimental purposes and using different types of detectors.
Specialized tutorials for Small Angle Scattering and UV-Vis Spectrophotometry will take place in BL4-2 and BL11-1 respectively.
BL12-2 will be dedicated to participants collecting data on their own samples.
For data collection and tutorials at the beamlines, the participants will be split in 8 groups (named after colors) based on their areas of interest. Participants will also be given the opportunity to collect data remotely overnight or in slots of beamtime marked "unscheduled" (for example, to screen crystals grown during the crystallization workshop). These slots will be assigned based on the number and properties of the samples brought by the participants.
The group assignments can be found here.
Time | BL12-2 (Participants' samples) | BL11-1 (Microspec) | BL14-1 (MAD/SAD data collection) | BL4-2/B. 131 (SAXS) | BL9-2 (General data collection, use of PAD) | BL7-1 (see "Tutorials") |
---|---|---|---|---|---|---|
Tues 19:30 | Shanbhogue, Rana | - | - | - | - | - |
Wed 8:00 | Rana, Singh | - | - | - | - | - |
Wed 10:00 | Gori Lusa | Red | Magenta | Purple | Cyan | - |
Wed 14:00 | Gori Lusa, Domingos | Coral | Purple | Red | Yellow | - |
Wed 19:00 | Santos, Shelton | Unscheduled | Yellow | Indigo, Singh | Green | - |
Wed 22:00 | Shelton,O'Sullivan | Unscheduled | Singh, Giannini | - | Rudiño | Unscheduled |
Thu 8:00 | Bueno, de Sousa | Unscheduled | Indigo | Yellow, Gupta | Coral | - |
Thu 10:30 | de Sousa, Costa | Magenta, Gori Lusa | Red | Coral | Purple | - |
Thu 14:00 | Costa | Indigo, de Sousa, Wang | Coral | Magenta | Red | - |
Thu 19:00 | Sharma, Gupta, Buzovetskaya | Wang | Cyan | - | Indigo | - |
Thu 22:00 | Koenigsberg | Unscheduled | - | - | Unscheduled | Unscheduled |
See A map of the SSRL beamlines.
Tutors
There will be sign-up sheets for the tutorials at the Redwood room during the lectures on Monday and Tuesday and in the BL9 lounge area after that.
Time | Phenix | CCP4/DIALS | Sample freezing and mounting | Molecular Replacement | Sharp/Autosharp/ Autoproc | HKL |
---|---|---|---|---|---|---|
Tuesday 19:30-21:30 | Phenix GUI introduction SAD structure determination with phenix.autosol Ligand fitting with phenix.ligandfit B. 120, room 300 | B. 452, room 101 | BL7-1 | B. 274 | B. 452, room 103 | B. 270 room 19A |
Wed 8:30-10:30 | Phenix GUI introduction Molecular replacement with phenix.phaser Refinement with phenix.refine B. 120, room 300 | B. 452, room 101 | BL7-1 | B. 274 | B. 452, room 103 | B. 270 room 19A |
Wed 11:00-13:00 | Phenix GUI
introduction Refinement with phenix.refine SAD structure determination with phenix.autosol B. 120, room 300 | B. 452, room 101 | BL7-1 | B. 274 | B. 452, room 103 | B. 270 room 19A |
Wed 14:00-17:00 | Phenix GUI introduction SAD structure determination with phenix.autosol Refinement and validation with phenix.refine Ligand fitting with phenix.ligandfit B. 120, room 300 | B. 452, room 101 | BL7-1 | B. 274 | B. 452, room 103 | B. 270 room 19A |
Wed 19:30-21:30 | Phenix GUI
introduction Refinement with phenix.refine Molecular replacement with phenix.phaser B. 120, room 300 | B. 452, room 101 | BL7-1 | B. 274 | B. 452, room 103 | B. 270 room 19A |
Thu 8:30-10:30 | Ligand preparation with
phenix.elbow Ligand fitting with phenix.ligandfit Molecular replacement with phenix.phaser B. 120, room 300 | B. 452, room 101 | BL7-1 | B. 274 | B. 452, room 103 | B. 270 room 19A |
Thu 11:00-13:00 | Ligand preparation with
phenix.elbow Ligand fitting with phenix.ligandfit SAD structure determination with phenix.autosol B. 120, room 300 | B. 452, room 101 | BL7-1 | B. 274 | B. 452, room 103 | B. 270 room 19A |
Thu 14:00-17:00 | Phenix GUI introduction SAD structure determination with phenix.autosol Molecular replacement with phenix.phaser Ligand preparation with phenix.elbow Ligand fitting with phenix.ligandfit B. 120, room 300 | B. 452, room 101 | BL7-1 | B. 274 | B. 452, room 103 | B. 270 room 19A |
Thu 19:30-21:30 | Ligand preparation with
phenix.elbow Ligand fitting with phenix.ligandfit Molecular replacement with phenix.phaser B. 120, room 300 | B. 452, room 101 | BL7-1 | B. 274 | B. 452, room 103 | B. 270 room 19A |
Tutors
Reservations can be made by phone (650) 926-2800, email guesthouse@stanford.edu
or via their web
site.
Course dates: April 24-29 2016
Registration for the course is now closedAna Gonzalez
Bus: (650) 926-8682
Email: ana@slac.stanford.edu
Clyde Smith
Bus: (650)
926-8544
Email: csmith@slac.stanford.edu