#Sample parameters file for SasTool Version 0.9.1.1, built on March 05, 2009
#log file name (This has to be the first item, required)
-l sample.log
#
#Beam center (required)
-c 343.4691 250.5907
#
#Area to be integrated (required).
#yes means to use the area covered by the larger angle.
#points can be replaced with angle, in which case, give starting angle in degrees 
#(ccw from horizontal line through the beam center) and range (always positive and less than 180)
#-a no points 80 461.67 100 55.535
-a no angle 140 80 
#
#Convert pixels to q (optional, default is no conversion). 
#use "wide" for wide angle conversion
-q no 0 0.0 102 0.1076 205 0.2152 308 0.3228
#
#Use i1 or i2 (optional, default is not using i1 or i2) the last number is the base for i1 or i2.   
#For best results, the base i1 or i2 should be equal to or slightly greater than the actual i1 or i2
#If the base is too big, it may cause errors that are too big to cause the program generate 
#incorrect results
-i yes i1 10000
#
#Reject frames depending on the factor (optional, default is no rejection)
-r yes 2.0
#
#Subtract buffer from individual sample frame (optional, default is No)
-s no
#
#Reuse buffer .tot file, if any, (optional, default is No)
-t no
#
#Subtract background obtained from a region of the image. If yes, then 
#specify either use angle or points (similar to -a tag) (default is no)
#this is HamaCCD specific 
#-b yes points 450 279.45 440 224.44
-b yes angles -28 56
#
#Detector offset for image (optional, default is 10)
-o 0 
#
#i1/i2 file name for Hamamatsu images.  Up to two file-name num-of-frames sets, the first set for 
#sample and the second set for buffer.  In the file, i1 comes first for all the frames, then i2 
#for all the frames.
#Note: this parameter has to be set after -i parameter. Otherwise SasTool does not know to use 
#i1 or i2
#-h ../isample1.txt 120 ../ibuffer1.txt 100
#-h ../HamaCCd/a93002.406 10
#
#Mask file for data, obtained from FIT2D (optional, default is no).
#File names can be relative or absolute but cannot contain spaces
-m no ./mask.tif
#
# mask file for Hamamatsu images, normally obtained from Fit2D
#-k yes D:\Data\hama_mask.tif
#
#Whether to have different detector offsets for four individual quadrants (default is no). 
#If yes, two sets of numbers are required (each set has two numbers). The first set gives the 
#boundaries for offsets calculation. The areas will be where the column number is smaller than the 
#small number and larger than the large number. And the second set gives the boundaries in column 
#numbers for the area that should be included in data integration.  
#Note, if this parameter is set, the -o parameter will be ignored
-d no 17 493 30 480
#
#whether to use the buffer and sample naming convention (optional, default is no)
#If yes, SasTool will process data from the start number to the end number
#If no start or end num is given, it starts from 1 to 999
#If only one number is given, it is assumed to be the start num
-n yes 1 33
#
#whether the exposed detector area is circular or rectangular in shape (optional, default is 
#circular). The image files generated by MarCCD 165 are circular, while those generated by 
#MX225-HE are rectangular. 
#-e rectangle
#
#whether to perform dezinger on the image (optional, default is no).  If "yes", give sigma factor, 
#above which data points will be eliminated.  If no factor is given for "yes", default factor is 3.0
#This could be useful for images that were acquired under "Normal" mode, and generally not useful 
#for those acquired under "Dezingered" mode. 
-z yes 3.0
#
#File names (this should always come last).
#The sample files come first, then buffer files, if any.
#File names can be relative or absolution but cannot contain spaces.
#Note, if -n parameter is defined as yes, any one file name from the directory will be enough
#to process the whole directory
-f ../sample03_0_01.tif ../buffer03_0_01.ti