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Stanford Synchrotron Radiation Lightsource

2009 Publications

Archive:

Journal Papers


  1. J. Abendroth, A. C. Kreger and W. G. J. Hol, "The Dimer Formed by the Periplasmic Domain of EpsL from the Type 2 Secretion System of Vibrio parahaemolyticus", J. Struct. Biol. 168, 313 (2009) doi: 10.1016/j.jsb.2009.07.022


  2. J. Abendroth, D. D. Mitchell, K. V. Korotkov, T. L. Johnson, A. Kreger, M. Sandkvist and W. G. J. Hol, "The Three-dimensional Structure of the Cytoplasmic Domains of EpsF from the Type 2 Secretion System of Vibrio cholerae", J. Struct. Biol. 166, 303 (2009) doi: 10.1016/j.jsb.2009.03.009


  3. V. Aguilar-Guerrero, R. J. Lobo-Lapidus and B. C. Gates, "Genesis of a Cerium Oxide Supported Gold Catalyst for CO Oxidation: Transformation of Mononuclear Gold Complexes into Clusters as Characterized by X-ray Absorption Spectroscopy", J. Phys. Chem. C 113, 3259 (2009) doi: 10.1021/jp808567a


  4. N. V. Aieta, R. J. Stanis, J. L. Horan, M. A. Yandrasits, D. J. Cookson, B. Ingham, M. F. Toney, S. J. Hamrock and A. M. Herring, "Clipped Random Wave Morphologies and the Analysis of the SAXS of an Ionomer Formed by Copolymerization of Tetrafluoroethylene and CF2=CFO(CF2)4SO3H", Macromolecules 42, 5774 (2009) doi: 10.1021/ma900719a


  5. G. Akgül, F. Aksoy, Y. Ufuktepe and J. Lüning, "Experimental Estimate of Electron Escape Depth in Fe", Solid State Commun. 149, 384 (2009) doi: 10.1016/j.ssc.2008.12.014


  6. N. Aliaga-Alcalde, S. DeBeer George, I. Alfaro-Fuentes, G. J. T. Cooper, N. Barba-Behrens, S. Bernes and J. Reedijk, "Physical Characterization and Biological Studies of a (Streptidine)(PtIICl4) Compound", Polyhedron 28, 3456 (2009) doi: 10.1016/j.poly.2009.07.022


  7. I. Aliagas-Martin, D. Burdick, L. Corson, J. Dotson, J. Drummond, C. Fields, O. W. Huang, T. Hunsaker, T. Kleinheinz, E. Krueger, J. Liang, J. Moffat, G. Phillips, R. Pulk, T. E. Rawson, M. Ultsch, L. Walker, C. Wiesmann, B. Zhang, B.-Y. Zhu and A. G. Cochran, "A Class of 2,4-Bisanilinopyrimidine Aurora A Inhibitors with Unusually High Selectivity against Aurora B", J. Med. Chem. 52, 3300 (2009) doi: 10.1021/jm9000314


  8. S. G. Aller, J. Yu, A. Ward, Y. Weng, S. Chittaboina, R. Zhuo, P. M. Harrell, Y. T. Trinh, Q. Zhang, I. L. Urbatsch and G. Chang, "Structure of P-Glycoprotein Reveals a Molecular Basis for Poly-specific Drug Binding", Science 323, 1718 (2009) doi: 10.1126/science.1168750


  9. O. Almog, A. Gonzalez, N. Godin, M. de Leeuw, M. J. Mekel, D. Klein, S. Braun, G. Shoham and R. L. Walter, "The Crystal Structures of the Psychrophilic Subtilisin S41 and the Mesophilic Subtilisin Sph Reeal the Same Calcium-loaded State", Proteins: Struct. Funct. Genet. 74, 489 (2009) doi: 10.1002/prot.22175


  10. Y. An, C. Y. Chen, B. Moyer, P. Rotkiewicz, M.-A. Elsliger, A. Godzik, I. A. Wilson and W. E. Balch, "Structural and Functional Analysis of the Globular Head Domain of p115 Provides Insight into Membrane Tethering", J. Mol. Biol. 391, 26 (2009) doi: 10.1016/j.jmb.2009.04.062


  11. L. L. Araujo, R. Giulian, B. Johannessen, D. J. Llewellyn, P. Kluth, G. de M. Azevedo, D. J. Cookson and M. C. Ridgway, "Structural Characterization of Ge Nanocrystals in Silica Amorphised by Ion Irradiation", Nucl. Instrum. Meth. Phys. Res. B (2008) doi: 10.1016/j.nimb.2008.03.175


  12. D. R. Artis, J. J. Lin, C. Zhang, W. Wang, U. Mehra, M. Perreault, D. Erbe, H. I. Krupka, B. P. England, J. Arnold, A. N. Plotnikov, A. Marimuthu, H. Nguyen, S. Will, M. Signaevsky, J. Kral, J. Cantwell, C. Settachatgull, D. S. Yan, D. Fong, A. Oh, S. Shi, P. Womack, B. Powell, G. Habets, B. L. West, K. Y. J. Zhang, M. V. Milburn, G. P. Vlasuk, K. P. Hirth, K. Nolop, G. Bollag, P. N. Ibrahim and J. F. Tobin, "Scaffold-based Discovery of Indeglitazar, a PPAR Pan-active Anti-diabetic Agent", Proc. Natl. Acad. Sci. USA 106, 262 (2009) doi: 10.1073/pnas.0811325106


  13. P. Banerjee, S. Sproules, T. Weyermuller, S. DeBeer George and K. Wieghardt, "Electronic Structure of the [Tris(dithiolene)chromium]z (z=0, 1-, 2-, 3-) Electron Transfer Series and Their Manganese(IV) Analogues. An X-ray Absorption Spectroscopic and Density Functional Theoretical Study", Inorg. Chem. 48, 5829 (2009) doi: 10.1021/ic900154v


  14. J. R. Bargar, C. C. Fuller, M. A. Marcus, A. J. Brearley, M. Perez De la Rosa, S. M. Webb and W. A. Caldwell, "Structural Characterization of Terrestial Microbial Mn Oxides from Pinal Creek, AZ", Geochim. Cosmochim. Acta 73, 889 (2009) doi: 10.1016/j.gca.2008.10.036


  15. C. B. Bell, III, J. R. Calhoun, E. Bobyr, P.-p. Wei, B. Hedman, K. O. Hodgson, W. F. DeGrado and E. I. Solomon, "Spectroscopic Definition of the Biferrous and Biferric Sites in de Novo Designed Four-helix Bundle DFsc Peptides: Implications for O2 Reactivity of Binuclear Non-heme Iron Enzymes", Biochemistry 48, 59 (2009) doi: 10.1021/bi8016087


  16. R. E. Berry, M. N. Shokhirev, A. Y. W. Ho, F. Yang, T. K. Shokhireva, H. Zhang, A. Weichsel, W. R. Montfort and F. A. Walker, "Effect of Mutation of Carboxyl Side-Chain Amino Acids Near the Heme on the Midpoint Potentials and Ligand Binding Constants of Nitrophorin 2 and its NO, Histamine, and Imidazole Complexes", J. Am. Chem. Soc. 131, 2313 (2009) doi: 10.1021/ja808105d


  17. C. H. Booth, E. D. Bauer, A. D. Bianchi, F. Ronning, J. D. Thompson, J. L. Sarrao, J. Young. Cho, J. Y. Chan, C. Capan and Z. Fisk, "Local Structure and Site Occupancy of Cd and Hg Substitutions in CeTin5 (T=Co, Rh, and Ir)", Phys. Rev. B 79, 144519 (2009) doi: 10.1103/PhysRevB.79.144519


  18. C. H. Booth, M. D. Walter, D. Kazhdan, Y.-J. Hu, W. W. Lukens, E. D. Bauer, L. Maron, O. Eisenstein and R. A. Andersen, "Decamethyltterbocene Complexes of Bipyridines and Diazabutadienes: Multiconfigurational Ground States and Open-Shell Singlet Formation", J. Am. Chem. Soc. 131, 6480 (2009) doi: 10.1021/ja809624w


  19. I. Bosanac, H. R. Maun, S. J. Scales, X. Wen, A. Lingel, F. J. Bazan, F. J. de Sauvage, S. G. Hymowitz and R. A. Lazarus, "The Structure of SHH in Complex with HHIP Reveals a Recognition Role for the Shh Pseudo Active Site in Signaling", Nat. Struct. Mol. Biol. 16, 691 (2009) doi: 10.1038/nsmb.1632


  20. A. Braun, X. Zhang, Y. Sun, U. Müller, Z. Liu, S. Erat, M. Ari, H. Grimmer, S. S. Mao and T. Graule, "Correlation of High Temperature X-ray Photoemission Valence Band Spectra and Conductivity in Strained LaSrFeNi Oxide on SrTiO3(110)", Appl. Phys. Lett. 95, 022107 (2009)


  21. T. Brezesinski, J. Wang, J. Polleux, B. Dunn and S. H. Tolbert, "Templated Nanocrystal-based Porous TiO2 Films for Next-Generation Electrochemical Capacitors", J. Am. Chem. Soc. 131, 1802 (2009) doi: 10.1021/ja8057309


  22. D. N. Briggs, K. H. Lawrence and A. T. Bell, "An Investigation of Carbon-supported CuCl2/PdCl2 Catalysts for Diethyl Carbonate Synthesis", Appl. Catal., A 366, 71 (2009) doi: 10.1016/j.apcata.2009.06.032


  23. P. Brocorens, A. Van Vooren, M. L. Chabinyc, M. F. Toney, M. Shkunov, M. Heeney, I. McCulloch, J. Cornil and R. Lazzaroni, "Solid-State Supramolecular Organization of Polythiophene Chains Containing Thienothiophene Units", Adv. Mater. 21, 1193 (2009) doi: 10.1002/adma.200801668


  24. C. Bryant, I. D. Kerr, M. Debnath, K. K. H. Ang, J. Ratnam, R. S. Ferreira, P. Jaishankar, D. Zhao, M. R. Arkin, J. H. McKerrow, L. S. Brinen and d. R. Renslo, "Novel Non-peptidic Vinylsulfones Targeting the S2and S3 Subsites of Parasite Cysteine Proteases", Bioorg. Med. Chem. Lett. 19, 6218 (2009) doi: 10.1016/j.bmcl.2009.08.098


  25. M. W. Busbee, B. D. Kocar and S. G. Benner, "Irrigation Produces Elevated Arsenic in the Underlying Groundwater of a Semi-arid Basin in Southwestern Idaho", Appl. Geochem. 24, 843 (2009) doi: 10.1016/j.apgeochem.2009.01.011


  26. Z. T. Campbell, W. R. Montfort and T. O. Baldwin, "Crystal Structure of the Bacterial Luciferase: Flavin Complex Provides Insight into the Function of the B Subunit", Biochemistry 48, 6085 (2009) doi: 10.1021/bi900003t


  27. H. A. Castillo-Michel, N. Zuverza-Mena, J. G. Parsons, K. M. Dokken, M. Duarte-Gardea, J. R. Peralta-Videa and J. L. Gardea-Torresdey, "Accumulation, Speciation, and Coordination of Arsenic in an Inbred Line and a Wild Type Cultivar of the Desert Plant Species Chilopsis linearis (Desert willow)", Phytochemistry 70, 540 (2009) doi: 10.1016/j.phytochem.2009.01.010


  28. H. A. Castillo-Michel, N. Hernandez, A. Martinez-Martinez, J. G. Parsons, J. R. Peralta-Videa and J. L. Gardea-Torresdey, "Coordination and Speciation of Cadmium in Corn Seedlings and Its Effects on Macro- and Micronutrients Uptake", Plant Physiol. Bioch. 47, 608 (2009) doi: 10.1016/j.plaphy.2009.02.005


  29. S. L. Chan, L. Y. Low, S. Hsu, S. Li, T. Liu, E. Santelli, G. Le Negrate, J. C. Reed, V. L. Woods, Jr. and J. Pascual, "Crystal Structure of a Bacterial TIR Domain", J. Biol. Chem. 284, 21386 (2009) doi: 10.1074/jbc.C109.007591


  30. E. Chalmin, F. Farges and G. E. Brown, Jr., "A Pre-edge Analysis of Mn K-edge XANES Spectra to Help Determine the Speciation of Manganese in Minerals and Glasses", Contrib. Mineral. Petr. 157, 111 (2009) doi: 10.1007/s00410-008-0323-z


  31. T. H. Charpentier, P. T. Wilder, M. A. Liriano, K. M. Varney, S. Zhong, A. Coop, E. Pozharski, A. D. MacKerell, Jr., E. A. Toth and D. J. Weber, "Small Molecules Bound to Unique Sites in the Target Protein Binding Cleft of Calcium-Bound S100B as Characterized by Nuclear Magnetic Resonance and X-ray Crystallography", Biochemistry 48, 6202 (2009) doi: 10.1021/bi9005754


  32. Y. L. Chen, J. G. Analytis, J. H. Chu, Z. K. Liu, S.-K. Mo, X. L. Qi, H. J. Zhang, D. H. Lu, X. Dai, S. C. Zhang, I. R. Fisher, Z. Hussain and Z.-X. Shen, "Experimental Realization of a Three-Dimensional Topological Insulator, Bi2Te3", Science (2009) doi: 10.1126/science.1173034


  33. D. M. Chenoweth and P. B. Dervan, "Allosteric Modulation of DNA by Small Molecules", Proc. Natl. Acad. Sci. USA 106, 13175 (2009) doi: 10.1073/pnas.0906532106


  34. S. Cheong, J. Watt, B. Ingham, M. F. Toney and R. D. Tilley, "In Situ and Ex Situ Studies of Platinum Nanocrystals: Growth and Evolution in Solution", J. Am. Chem. Soc. (2009) doi: 10.1021/ja9065688


  35. L. T. Cherney, M. M. Cherney, C. R. Garen and M. N. G. James, "The Structure of the Arginine Repressor from Mycobacterium tuberculosis Bound with Its DNA Operator and Co-repressor, L-Arginine", J. Mol. Biol. 388, 85 (2009) doi: 10.1016/j.jmb.2009.02.053


  36. R. R. Chianelli, G. Berhault and B. Torres, "Unsupported Transition Metal Sulfide Catalysts: 100 Years of Science and Application", Catal. Today 147, 275 (2009) doi: 10.1016/j.cattod.2008.09.041


  37. J. G. Chigvinadze, J. V. Acrivos, I. G. Akhvlediani, M. I. Chubabria, T. L. Kalabegishvili and T. I. Sanadze, "The Investigation of EPR Paramagnetic Probe Line Width and Shape Temperature Dependence in High-temperature Superconductors of Bi-Pb-Sr-Ca-Cu-O System", Phys. Lett. A 373, 874 (2009) doi: 10.1016/j.physleta.2008.11.066


  38. J. Cho, R. Sarangi, J. Annaraj, S. Y. Kim, M. Kubo, T. Ogura, E. I. Solomon and W. Nam, "Geometric and Electronic Structure and Reactivity of a Mononuclear 'Side-on' Nickel(III)-peroxo Complex", Nat. Chem. 1, 568 (2009) doi: 10.1038/nchem.366


  39. M. C. Choi, U. Raviv, H. P. Miller, M. R. Gaylord, E. Kris, D. Ventimiglia, D. J. Needleman, M. W. Kim, L. Wilson, S. C. Feinstein and C. R. Safinya, "Human Microtubule-Associated-Protein Tau Regulates the Number of Protofilaments in Microtubules: A Synchrotron X-ray Scattering Study", Biophys. J. 97, 519 (2009) doi: 10.1016/j.bpj.2009.04.047

  40. S. Choi, P. A. O'Day and J. G. Hering, "Natural Attenuation of Arsenic by Sediment Sorption and Oxidation", Environ. Sci. Technol. 43, 4253 (2009) doi: 10.1021/es802841x


  41. R. V. Chopdekar, E. Arenholz and Y. Suzuki, "Orientation and Thickness Dependence of Magnetization at the Interfaces of Highly Spin-polarized Manganite Thin Films ", Phys. Rev. B 79, 104417 (2009) doi: 10.1103/PhysRevB.79.104417


  42. M. S. Chow, B. E. Eser, S. A. Wilson, K. O. Hodgson, B. Hedman, P. F. Fitzpatrick and E. I. Solomon, "Spectroscopy and Kinetics of Wild-Type and Mutant Tyrosine Hydroxylase: Mechanistic Insight into O2 Activation", J. Am. Chem. Soc. 131, 7685 (2009) doi: 10.1021/ja810080c


  43. W. A. Clay, Z. Liu, W. Yang, J. D. Fabbri, J. E. Dahl, R. M. K. Carlson, Y. Sun, P. A. Pianetta, N. Melosh and Z.-X. Shen, "Origin of the Monochromatic Photoemission Peak in Diamondoid Monolayers", Nano Lett. 9, 57 (2009) doi: 10.1021/nl802310k


  44. V. Cody, J. Pace, L. Lin and A. Gangjee, "The Z Isomer of 2,4-diaminofuro[2,3-d]pyrimidine Antifolate Promotes Unusual Crystal Packing in a Human Dihydrofolate Reductase Ternary Complex", Acta Crystallogr. F 65, 762 (2009) doi: 10.1107/S1744309109025548


  45. V. Cody, J. Pace, J. Makin, J. Piraino, S. F. Queener and A. Rosowsky, "Correlations of Inhibitor Kinetics for Pneumocystis jirovacii and Human Dihydrofolate Reductase with Structural Data for Human Active Site Mutant Enzyme Complexes", Biochemistry 48, 1702 (2009) doi: 10.1021/bi801960h


  46. F. Cohen, B. Alicke, L. O. Elliott, J. A. Flygare, T. Goncharov, S. F. Keteltas, M. C. Franklin, S. Frankovitz, J.-P. Stephan, V. Tsui, D. Vucic, H. Wong and W. J. Fairbrother, "Orally Bioavailable Antagonists of Inhibitor of Apoptosis Proteins Based on an Azabicyclooctane Scaffold", J. Med. Chem. 52, 1723 (2009) doi: 10.1021/jm801450c


  47. A. R. Conlan, H. L. Axelrod, A. E. Cohen, E. C. Abresch, J. Zuris, D. Yee, R. Nechushtai, P. A. Jennings and M. L. Paddock, "Crystal Structures of Miner 1: The Redox-active 2Fe-2S Protein Causative in Wolfram Syndrome 2", J. Mol. Biol. 392, 143 (2009) doi: 10.1016/j.jmb.2009.06.079


  48. A. R. Conlan, M. L. Paddock, H. L. Axelrod, A. E. Cohen, E. C. Abresch, S. Wiley, M. Roy, R. Nechushtai and P. A. Jennings, "The Novel 2Fe-2S Outer Mitochondrial Protein MitoNEET Displays Conformational Flexibility in Its N-terminal Cytoplasmic Tethering Domain", Acta Crystallogr. F 65, 654 (2009) doi: 10.1107/S1744309109019605


  49. C. Corrado, Y. Jiang, F. Oba, M. Kozina, F. Bridges and J. Z. Zhang, "Synthesis, Structural, and Optical Properties of Stable ZnS:Cu,Cl Nanocrystals", J. Phys. Chem. A 13, 3830 (2009) doi: 10.1021/jp809666t


  50. J. M. Crawford, T. P. Korman, J. W. Labonte, A. L. Vagstad, E. A. Hill, O. Kamari-Bidkorpeh, S.-C. Tsai and C. A. Townsend, "Structural Basis for Biosynthetic Programming of Fungal Aromatic Polyketide Cyclization", Nature 461, 1139 (2009) doi: 10.1038/nature08475


  51. K. Dalal, N. Nguyen, M. Alami, J. Tan, T. F. Moraes, W. C. Lee, R. Maurus, S. S. Sligar, G. D. Brayer and F. Duong, "Structure, Binding and Activity of Syd, a SecY Interacting Protein", J. Biol. Chem. 284, 7897 (2009) doi: 10.1074/jbc.M808305200


  52. E. Damian Risberg, F. Jalilehvand, B. O. Leung, L. G. M. Pettersson and M. Sandström, "Theoretical and Experimental Sulfur K-edge X-ray Absorption Spectroscopic Study of Cysteine, Cystine, Homocysteine, Penicillamine, Methionine and Methionine Sulfoxide", Dalton Trans. 3542 (2009) doi: 10.1039/b819257j


  53. E. Damian Risberg, J. Mink, A. Abbasi, M. Yu. Skripkin, L. Hajba, P. Lindqvist-Reis, E. Bencze and M. Sandström, "Ambidentate Coordination in Hydrogen Bonded Dimethyl Sulfoxide, (CH3)2)SO···H3O+, and in Dichlorobis(dimethyl sulfoxide) Palladium(II) and Platinum(II) Solid Solvates, by Vibrational and Sulfur K-edge X-ray Absorption Spectroscopy", Dalton Trans. 1328 (2009) doi: 10.1039/b814252a


  54. D. R. Davies, B. Mamat, O. T. Magnusson, J. Christensen, M. H. Haraldson, R. Mishra, B. Pease, E. Hansen, J. Singh, D. Zembower, H. Kim, A. S. Kiselyov, A. B. Burgin, M. E. Gurney and L. J. Stewart, "Discovery of Leukotriene A4 Hydrolase Inhibitors Using Metabolomics Biased Fragment Crystallography", J. Med. Chem. 52, 4694 (2009) doi: 10.1021/jm900259h


  55. C. J. De Feo, S. G. Aller, G. S. Siluvai, N. J. Blackburn and V. M. Unger, "Three-dimensional Structure of the Human Copper Transporter hCTR1", Proc. Natl. Acad. Sci. USA 106, 4237 (2009) doi: 10.1073/pnas.0810286106


  56. S. Della-Longa, L. X. Chen, P. Frank, K. Hayakawa, K. Hatada and M. Benfatto, "Direct Deconvolution of Two-State Pump-Probe X-ray Absorption Spectra and the Structural Changes in a 100 ps Transient of Ni(II)-tetramesitylporphyrin", Inorg. Chem. 48, 3934 (2009) doi: 10.1021/ic8008943


  57. D. M. DeLongchamp, R. Joseph. Kline, Y. Jung, D. S. Germack, E. K. Lin, A. J. Moad, L. J. Richter, M. F. Toney, M. Heeney and I. McCulloch, "Controlling the Orientation of Terraced Nanoscale "Ribbons" of a Poly(thiophene) Semiconductor", ACS Nano 3, 780 (2009) doi: 10.1021/nn800574f


  58. C. A. Demmelmaier, R. E. White, J. A. van Bokhoven and S. L. Scott, "Evidence for a Chromasiloxane Ring Size Effect in Phillips (Cr/SiO2) Polymerization Catalysts", J. Catal. 262, 44 (2009) doi: 10.1016/j.jcat.2008.11.024


  59. A. Dey, Y. Jiang, P. Ortiz de Montellano, K. O. Hodgson, B. Hedman and E. I. Solomon, "S K-edge XAS and DFT Calculations on Cytochrome P450: Covalent and Ionic Contributions to the Cysteine-Fe Bond and Their Contribution to Reactivity", J. Am. Chem. Soc. 131, 7869 (2009) doi: 10.1021/ja901868q


  60. G. J. Dick, B. G. Clement, S. M. Webb, F. J. Fodrie, J. R. Bargar and B. M. Tebo, "Enzymatic Microbial Mn(II) Oxidation and Mn Biooxide Production in the Guaymas Basis Deep-Sea Hydrothermal Plume", Geochim. Cosmochim. Acta 19, 6218 (2009) doi: 10.1016/j.gca.2009.07.039


  61. K. M. Dokken, J. G. Parsons, J. McClure and J. L. Gardea-Torresdey, "Synthesis and Structural Analysis of Copper(II) Cysteine Complexes", Inorg. Chim. Acta 362, 395 (2009) doi: 10.1016/j.ica.2008.04.037


  62. C. J. Doonan, W. Morris, H. Furukawa and O. M. Yaghi, "Isoreticular Metalation of Metal-Organic Frameworks", J. Am. Chem. Soc. 131, 9492 (2009) doi: 10.1021/ja903251e


  63. O. W. Duckworth, J. R. Bargar, A. A. Jarzecki, O. Oyerinde, T. G. Spiro and G. Sposito, "The Exceptionally Stable Cobalt(III)-Desferrioxamine B Complex", Mar. Chem. 113, 114 (2009) doi: 10.1016/j.marchem.2009.01.003


  64. O. W. Duckworth, J. R. Bargar and G. Sposito, "Quantitative Structure-Activity Relationships for Aqueous Metal-Siderophore Complexes", Environ. Sci. Technol. 43, 343 (2008) doi: 10.1021/es802044y


  65. P. W. Dunten, E. J. Little and N. C. Horton, "The Restriction Enzyme SgrAI: Structure Solution via Combination of Poor MIRAS and MR Phases", Acta Crystallogr. D 65, 393 (2009) doi: 10.1107/S0907444909003266


  66. M. Egal, C. Casiot, G. Morin, M. Parmentier, O. Bruneel, S. Lebrun and F. Elbaz-Poulichet, "Kinetic Control on the Formation of Tooeleite, Schwertmannite an Jarosite by Acidithiobacillus ferrooxidans Strains in an As(III)-rich Acid Mine Water", Chem. Geol. 265, 432 (2009) doi: 10.1016/j.chemgeo.2009.05.008


  67. J. England, M. Martinho, E. R. Farquhar, J. R. Frisch, E. L. Bominaar, E. Münck and L. Que, Jr., "A Synthetic High-Spin Oxoiron(IV) Complex: Generation, Spectroscopic Characterization, and Reactivity", Angew. Chem., Int. Ed. Engl. 48, 3622 (2009) doi: 10.1002/anie.200900863


  68. A. S. Erickson, J.-H. Chu, M. F. Toney, T. H. Geballe and I. R. Fisher, "Enhanced Superconducting Pairing Interaction in Indium-doped Tin Telluride", Phys. Rev. B 79, 024520 (2009) doi: 10.1103/PhysRevB.79.024520


  69. D. Fandeur, F. Juillot, G. Morin, L. Olivi, A. Cognigni, S. M. Webb, J.-P. Ambrosi, E. Fritsch, F. Guyot and G. E. Brown, Jr., "XANES Evidence for Oxidation of Cr(III) to Cr(VI) by Mn-Oxides in a Lateritic Regolith Developed on Serpentinized Ultramafic Rocks of New Caledonia", Environ. Sci. Technol. (2009) doi: 10.1021/es900498r


  70. H. Feinberg, C. K. W. Tso, M. E. Taylor, K. Drickamer and W. I. Weis, "Segmented Helical Structure of the Neck Region of the Glycan-binding Receptor DC-SIGNR", J. Mol. Biol. (2009) doi: 10.1016/j.jmb.2009.10.006


  71. J. O. Freeman, W. C. Lee, M. E. P. Murphy and J. C. Sherman, "X-ray Crystal Analysis of a TASP: Structural Insights of a Cavitein Dimer", J. Am. Chem. Soc. 131, 7421 (2009) doi: 10.1021/ja901404w


  72. D. Friebel, D. Miller, H. Ogasawara, T. Anniyev, U. Bergmann, J. Bargar and A. Nilsson, "In Situ GIXAFS and HERFD-XAS Studies of a Pt-modified Rh(111) Electrode", ECS Trans 25, 1065 (2009)


  73. J. R. Frisch, V. V. Vu, M. Martinho, E. Münck and L. Que, Jr, "Characterization of Two Distinct Adducts in the Reaction of a Nonheme Diiron(II) Complex with O2", Inorg. Chem. 48, 8325 (2009) doi: 10.1021/ic900961k


  74. M. Furukawa, T. Yamada, S. Katano, M. Kawai, H. Ogasawara and A. Nilsson, "Geometrical Characterization of Adenine and Guanine on Cu(110) by NEXAFS, XPS, and DFT Calculation", Surf. Sci. doi: 10.1016/j.susc.2007.09.009


  75. A. Gangjee, W. Li, R. L. Kisliuk, V. Cody, J. Pace, J. Piraino and J. Makin, "Design, Synthesis, and X-ray Crystal Structure of Classical and Nonclassical 2-Amino-4-oxo-5-substituted-6-ethylthieno[2,3-d] Pyrimidines as Dual Thymidylate Synthase and Dihydrofolate Reductase Inhibitors and as Potential Antitumor Agents", J. Med. Chem. 52, 4892 (2009) doi: 10.1021/jm900490a


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  301. W. Yang, R. V. Fucini, B. T. Fahr, M. Randal, K. E. Lind, M. B. Lam, W. Lu, Y. Lu, D. R. Cary, M. J. Romanowski, D. Colussi, B. Pietrak, T. J. Allison, S. K. Munshi, D. M. Penny, P. Pham, J. Sun, A. E. Thomas, J. M. Wilkinson, J. W. Jacobs, R. S. McDowell and M. D. Ballinger, "Fragment-based Discovery of Nonpeptidic BACE-1 Inhibitors Using Tethering", Biochemistry 48, 4488 (2009) doi: 10.1021/bi900017q


  302. J. Yano and V. K. Yachandra, "X-ray Absorption Spectroscopy", Photosynth. Res. (2009) doi: 10.1007/s11120-009-9473-8


  303. M. Yi, D. H. Lu, J. G. Analytis, J.-H. Chu, S.-K. Mo, R.-H. He, R. G. Moore, X. J. Zhou, G. F. Chen, J. L. Luo, N. L. Wang, Z. Hussain, D. J. Singh, I. R. Fisher and Z.-X. Shen, "Electronic Structure of the BaFe2As2 Family of Iron-Pnictide Superconductors", Phys. Rev. B 80, 024515 (2009) doi: 10.1103/PhysRevB.80.024515


  304. I. Yocupicio-Villegas, H. E. Esparza-Ponce and A. Duarte-Möller, "X-ray Absorption Spectroscopy and X-ray Diffraction Analysis of Crystalline CoTi2 Grown by DC Co-sputtering: A Theoretical and Experimental Comparison", J. Alloys Compd. 474, 283 (2009) doi: 10.1016/j.jallcom.2008.06.129


  305. A. Yonath, "Large Facilities and the Evolving Ribosome, the Cellular Machine for Genetic-code Translation", J. R. Soc. Interface 6, S575 (2009) doi: 10.1098/?rsif.2009.0167.focus


  306. J. M. Yoshizawa, M. A. Blank, A. W. Fay, C. C. Lee, J. A. Wiig, Y. Hu, K. O. Hodgson, B. Hedman and M. W. Ribbe, "Optimization of FeMoco Maturation of NifEN", J. Am. Chem. Soc. 131, 9321 (2009) doi: 10.1021/ja9035225


  307. P. G. Young, R. Walanj, V. Lakshmi, L. J. Byrnes, P. Metcalf, E. N. Baker, S. B. Vakulenko and C. A. Smith, "The Crystal Structures of Substrate and Nucleotide Complexes of Enterococcus faecium Aminoglycoside-2"-Phosphotransferase-IIa [APH(2")-IIa] Provide Insights into Substrate Selectivity in the APH (2") Sub-Family", J. Bacteriol. 191, 4133 (2009) doi: 10.1128/JB.00149-09


  308. C. Yu, S. Koh, J. E. Leisch, M. F. Toney and P. Strasser, "Size and Composition Distribution of Alloy Nanoparticle Electrocatalysts Probed by Anomalous Small Angle X-ray Scattering (ASAXS)", Faraday Discuss. 140, 283 (2009) doi: 10.1039/b801586d


  309. J. Zaitseva, K. M. Meneely and A. L. Lamb, "Structure of Escherichia coli Malate Dehydrogenase at 1.45 Å Resolution", Acta Crystallogr. F 65, 866 (2009) doi: 10.1107/S1744309109032217


  310. B. M. Zeglis, V. C. Pierre, J. T. Kaiser and J. K. Barton, "A Bulky Rhodium Complex Bound to an Adenosine-Adenosine DNA Mismatch: General Architecture of the Metalloinsertion Binding Mode", Biochemistry 48, 4247 (2009) doi: 10.1021/bi900194e


  311. L. Zhang, J. Lichtmannegger, K. H. Summer, S. Webb, I. J. Pickering and G. N. George, "Tracing Copper-Thiomolybdate Complexes in a Prospective Treatment for Wilson's Disease", Biochemistry 48, 891 (2009) doi: 10.1021/bi801926e


  312. R. Zhang, C. Li, L. K. Williams, B. P. Rempel, G. D. Brayer and S. G. Withers, "Directed "in Situ" Inhibitor Elongation as a Strategy to Structurally Characterize the Covalent Glycosyl-Enzyme Intermediate of Human Pancreatic a-Amylase", Biochemistry (2009) doi: 10.1021/bi901400p


  313. Y. Zhang, M. M. Cherney, M. Solomonson, J. Liu, M. N. G. James and J. H. Weiner, "Preliminary X-ray Crystallographic Analysis of Sulfide:Quinone Oxidoreductase from Acidithiobacillus ferrooxidans", Acta Crystallogr. F 65, 839 (2009) doi: 10.1107/S1744309109027535


  314. Y. Zhang, I. Thiele, D. Weekes, Z. Li, L. Jaroszewski, K. Ginalski, A. M. Deacon, J. Wooley, S. A. Lesley, I. A. Wilson, B. Palsson, A. Osterman and A. Godzik, "Three-dimensional Structural View of the Central Metabolic Network of Thermotoga maritima", Science 325, 1544 (2009) doi: 10.1126/science.1174671


  315. Y. Zhang, J. Wei, H. W. Ou, J. F. Zhao, B. Zhou, F. Chen, M. Xu, C. He, G. Wu, H. Chen, M. Arita, K. Shimada, H. Namatame, M. Taniguchi, X. H. Chen and D. L. Feng, "Unusual Doping Dependence of the Electronic Structure and Coexistence of Spin-Density-Wave and Superconductor Phases in Single Crystalline Sr1-xKxFe2As2", Phys. Rev. Lett. 102, 127003 (2009) doi: 10.1103/PhysRevLett.102.127003


  316. Z. Zhang, E. M. M. Bulloch, R. D. Bunker, E. N. Baker and C. J. Squire, "Structure and Function of GlmU from Mycobacterium tuberculosis", Acta Crystallogr. D 65, 275 (2009) doi: 10.1107/S0907444909001036


  317. Z. Zhang, T. T. Caradoc-Davies, J. M. Dickson, E. N. Baker and C. J. Squire, "Structures of Glycinamide Ribonucleotide Transformylase (PurN) from Mycobacterium tuberculosis Reveal a Novel Dimer with Relevance to Drug Discovery", J. Mol. Biol. 389, 722 (2009) doi: 10.1016/j.jmb.2009.04.044


  318. Z. Zhang, G. Helms, S. B. Clark, G. Tian, P. Zanonato and L. Rao, "Complexation of Uranium(VI) by Gluconate in Acidic Solutions: A Thermodynamic Study with Structural Analysis", Inorg. Chem. 48, 3814 (2009) doi: 10.1021/ic8018925


  319. H. Zhao and L. Tang, "Crystallographic Characterization of a Multidomain Histidine Protein Kinase from an Essential Two-Component Regulatory System", Acta Crystallogr. F 65, 346 (2009) doi: 10.1107/S174430910900668X


  320. Y. Zhao, J. G. Parsons, J. R. Peralta-Videa, M. L. Lopez-Moreno and J. L. Gardea-Torresdey, "Use of Synchrotron- and Plasma-based Spectroscopic Techniques to Determine the Uptake and Biotransformation of Chromium(III) and Chromium(VI) by Parkinsonia aculeata", Metallomics 1, 330 (2009) doi: 10.1039/b822927a


  321. Z. B. Zhao, J. Hershberger and J. C. Bilello, "In-Situ Observations of Stress-induced Thin Film Failures", Thin Solid Films (2009) doi: 10.1016/j.tsf.2009.09.004


  322. D. Zhu, B. Wu, R. Rick, J. Stöhr and A. Scherz, "Phase Retrieval in X-ray Lensless Holography by Reference Beam Tuning", Opt. Lett. 34, 2604 (2009)


  323. A. Zidovska, H. M. Evans, K. K. Ewert, J. Quispe, B. Carragher, C. S. Potter and C. R. Safinya, "Liquid Crystalline Phases of Dendritic Lipid-DNA Self-Assemblies: Lamellar, Hexagonal, and DNA Bundles", J. Phys. Chem. B 113, 3694 (2009) doi: 10.1021/jp806863z


  324. A. Zidovska, H. M. Evans, A. Ahmad, K. K. Ewert and C. R. Safinya, "The Role of Cholesterol and Structurally Related Molecules in Enhancing Transfection of Cationic Liposome-DNA Complexes", J. Phys. Chem. B 113, 5208 (2009) doi: 10.1021/jp809000e


Books & Conferences


  1. U. Bergmann and K. Knox, "Pseudo-color Enhanced X-ray Fluorescence Imaging of the Archimedes Palimpsest", Document Recognition and Retrieval XVI, K. Berkner, L. Likforman-Sulem (eds.), Proc. of SPIE-IS&T Electronic Imaging, SPIE 7247, 724702 (2009)


  2. J. Yano, Y. Pushkar, J. Messinger, U. Bergmann, P. Glatzel and V. K. Yachandra, "Electronic Structure and Oxidation State Changes in the Mn4Ca Cluster of Photosystem II", in Energy from the Sun, Proceedings of the 14th International Congress of Photosynthesis, J. Allen, E. Gantt, J. Golbeck, B. Osmond, B. (eds.) Springer, Dordrecht., in press


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