2009 Publications | Stanford Synchrotron Radiation Lightsource

Journal Papers

J. Abendroth, A. C. Kreger and W. G. J. Hol, "The Dimer Formed by the Periplasmic Domain of EpsL from the Type 2 Secretion System of Vibrio parahaemolyticus", J. Struct. Biol. 168, 313 (2009) doi: 10.1016/j.jsb.2009.07.022
J. Abendroth, D. D. Mitchell, K. V. Korotkov, T. L. Johnson, A. Kreger, M. Sandkvist and W. G. J. Hol, "The Three-dimensional Structure of the Cytoplasmic Domains of EpsF from the Type 2 Secretion System of Vibrio cholerae", J. Struct. Biol. 166, 303 (2009) doi: 10.1016/j.jsb.2009.03.009
V. Aguilar-Guerrero, R. J. Lobo-Lapidus and B. C. Gates, "Genesis of a Cerium Oxide Supported Gold Catalyst for CO Oxidation: Transformation of Mononuclear Gold Complexes into Clusters as Characterized by X-ray Absorption Spectroscopy", J. Phys. Chem. C 113, 3259 (2009) doi: 10.1021/jp808567a
N. V. Aieta, R. J. Stanis, J. L. Horan, M. A. Yandrasits, D. J. Cookson, B. Ingham, M. F. Toney, S. J. Hamrock and A. M. Herring, "Clipped Random Wave Morphologies and the Analysis of the SAXS of an Ionomer Formed by Copolymerization of Tetrafluoroethylene and CF₂=CFO(CF₂)₄SO₃H", Macromolecules 42, 5774 (2009) doi: 10.1021/ma900719a
G. Akgül, F. Aksoy, Y. Ufuktepe and J. Lüning, "Experimental Estimate of Electron Escape Depth in Fe", Solid State Commun. 149, 384 (2009) doi: 10.1016/j.ssc.2008.12.014
A. E. Aleshin, S. Gramatikova, G. L. Hura, A. Bobkov, A. Y. Strongin, B. Stec, J. A. Tainer, R. C. Liddington and J. W. Smith, "Crystal and Solution Structures of a Prokaryotic M16B Peptidase: an Open and Shut Case", Structure 17, 1465 (2009) doi: 10.1016/j.str.2009.09.009
N. Aliaga-Alcalde, S. DeBeer George, I. Alfaro-Fuentes, G. J. T. Cooper, N. Barba-Behrens, S. Bernes and J. Reedijk, "Physical Characterization and Biological Studies of a (Streptidine)(Pt^IICl₄) Compound", Polyhedron 16, 3459 (2009) doi: 10.1016/j.poly.2009.07.022
I. Aliagas-Martin, D. Burdick, L. Corson, J. Dotson, J. Drummond, C. Fields, O. W. Huang, T. Hunsaker, T. Kleinheinz, E. Krueger, J. Liang, J. Moffat, G. Phillips, R. Pulk, T. E. Rawson, M. Ultsch, L. Walker, C. Wiesmann, B. Zhang, B.-Y. Zhu and A. G. Cochran, "A Class of 2,4-Bisanilinopyrimidine Aurora A Inhibitors with Unusually High Selectivity against Aurora B", J. Med. Chem. 52, 3300 (2009) doi: 10.1021/jm9000314
S. G. Aller, J. Yu, A. Ward, Y. Weng, S. Chittaboina, R. Zhuo, P. M. Harrell, Y. T. Trinh, Q. Zhang, I. L. Urbatsch and G. Chang, "Structure of P-Glycoprotein Reveals a Molecular Basis for Poly-specific Drug Binding", Science 323, 1718 (2009) doi: 10.1126/science.1168750
O. Almog, A. Gonzalez, N. Godin, M. de Leeuw, M. J. Mekel, D. Klein, S. Braun, G. Shoham and R. L. Walter, "The Crystal Structures of the Psychrophilic Subtilisin S41 and the Mesophilic Subtilisin Sph Reeal the Same Calcium-loaded State", Proteins: Struct. Funct. Genet. 74, 489 (2009) doi: 10.1002/prot.22175
Y. An, C. Y. Chen, B. Moyer, P. Rotkiewicz, M.-A. Elsliger, A. Godzik, I. A. Wilson and W. E. Balch, "Structural and Functional Analysis of the Globular Head Domain of p115 Provides Insight into Membrane Tethering", J. Mol. Biol. 391, 26 (2009) doi: 10.1016/j.jmb.2009.04.062
D. R. Artis, J. J. Lin, C. Zhang, W. Wang, U. Mehra, M. Perreault, D. Erbe, H. I. Krupka, B. P. England, J. Arnold, A. N. Plotnikov, A. Marimuthu, H. Nguyen, S. Will, M. Signaevsky, J. Kral, J. Cantwell, C. Settachatgull, D. S. Yan, D. Fong, A. Oh, S. Shi, P. Womack, B. Powell, G. Habets, B. L. West, K. Y. J. Zhang, M. V. Milburn, G. P. Vlasuk, K. P. Hirth, K. Nolop, G. Bollag, P. N. Ibrahim and J. F. Tobin, "Scaffold-based Discovery of Indeglitazar, a PPAR Pan-active Anti-diabetic Agent", Proc. Natl. Acad. Sci. USA 106, 262 (2009) doi: 10.1073/pnas.0811325106
M. Bajorek, H. L. Schubert, J. McCullough, C. Langelier, D. M. Eckert, W.-M. B. Stubblefield, N. T. Uter, D. G. Myszka, C. P. Hill and W. I. Sundquist, "Structural Basis for ESCRT-III Protein Autoinhibition", Nat. Struct. Mol. Biol. 16, 754 (2009) doi: :10.1038/nsmb.l621
P. Banerjee, S. Sproules, T. Weyermuller, S. DeBeer George and K. Wieghardt, "Electronic Structure of the [Tris(dithiolene)chromium]^z (z=0, 1-, 2-, 3-) Electron Transfer Series and Their Manganese(IV) Analogues. An X-ray Absorption Spectroscopic and Density Functional Theoretical Study", Inorg. Chem. 48, 5829 (2009) doi: 10.1021/ic900154v
J. R. Bargar, C. C. Fuller, M. A. Marcus, A. J. Brearley, M. Perez De la Rosa, S. M. Webb and W. A. Caldwell, "Structural Characterization of Terrestial Microbial Mn Oxides from Pinal Creek, AZ", Geochim. Cosmochim. Acta 73, 889 (2009) doi: 10.1016/j.gca.2008.10.036
F. C. Beasley, E. D. Vines, J. C. Grigg, Q. Zheng, S. Liu, G. A. Lajole, M. E. P. Murphy and D. E. Heinrichs, "Characterization of Staphyloferrin A Biosynthetic and Transport Mutants in Staphylococcus aureus", Mol. Microbiol. 72, 947 (2009) doi: 10.1111/j.1365-2958.2009.06698.x
M. J. Beazley, R. J. Martinez, P. A. Sobecky, S. M. Webb and M. Taillefert, "Nonreductive Biomineralization of Uranium(VI) Phosphate Via Microbial Phosphatase Activity in Anaerobic Conditions", Geomicrobiol. J.. 26, 431 (2009) doi: 10.1080/01490450903060780
C. B. Bell, III, J. R. Calhoun, E. Bobyr, P.-p. Wei, B. Hedman, K. O. Hodgson, W. F. DeGrado and E. I. Solomon, "Spectroscopic Definition of the Biferrous and Biferric Sites in de Novo Designed Four-helix Bundle DFsc Peptides: Implications for O₂ Reactivity of Binuclear Non-heme Iron Enzymes", Biochemistry 48, 59 (2009) doi: 10.1021/bi8016087
U. Bergmann and P. Glatzel "X-ray Emission Spectroscopy", Photosynth. Res. 102, 255 (2009) doi: 10.1007/s11120-009-9483-6
R. E. Berry, M. N. Shokhirev, A. Y. W. Ho, F. Yang, T. K. Shokhireva, H. Zhang, A. Weichsel, W. R. Montfort and F. A. Walker, "Effect of Mutation of Carboxyl Side-Chain Amino Acids Near the Heme on the Midpoint Potentials and Ligand Binding Constants of Nitrophorin 2 and its NO, Histamine, and Imidazole Complexes", J. Am. Chem. Soc. 131, 2313 (2009) doi: 10.1021/ja808105d
C. H. Booth, E. D. Bauer, A. D. Bianchi, F. Ronning, J. D. Thompson, J. L. Sarrao, J. Young. Cho, J. Y. Chan, C. Capan and Z. Fisk, "Local Structure and Site Occupancy of Cd and Hg Substitutions in CeTin₅ (T=Co, Rh, and Ir)", Phys. Rev. B 79, 144519 (2009) doi: 10.1103/PhysRevB.79.144519
C. H. Booth, M. D. Walter, D. Kazhdan, Y.-J. Hu, W. W. Lukens, E. D. Bauer, L. Maron, O. Eisenstein and R. A. Andersen, "Decamethyltterbocene Complexes of Bipyridines and Diazabutadienes: Multiconfigurational Ground States and Open-Shell Singlet Formation", J. Am. Chem. Soc. 131, 6480 (2009) doi: 10.1021/ja809624w
I. Bosanac, H. R. Maun, S. J. Scales, X. Wen, A. Lingel, F. J. Bazan, F. J. de Sauvage, S. G. Hymowitz and R. A. Lazarus, "The Structure of SHH in Complex with HHIP Reveals a Recognition Role for the Shh Pseudo Active Site in Signaling", Nat. Struct. Mol. Biol. 16, 691 (2009) doi: 10.1038/nsmb.1632
A. Braun, X. Zhang, Y. Sun, U. Müller, Z. Liu, S. Erat, M. Ari, H. Grimmer, S. S. Mao and T. Graule, "Correlation of High Temperature X-ray Photoemission Valence Band Spectra and Conductivity in Strained LaSrFeNi Oxide on SrTiO₃(110)", Appl. Phys. Lett. 95, 022107 (2009)
T. Brezesinski, J. Wang, J. Polleux, B. Dunn and S. H. Tolbert, "Templated Nanocrystal-based Porous TiO₂ Films for Next-Generation Electrochemical Capacitors", J. Am. Chem. Soc. 131, 1802 (2009) doi: 10.1021/ja8057309
D. N. Briggs, K. H. Lawrence and A. T. Bell, "An Investigation of Carbon-supported CuCl₂/PdCl₂ Catalysts for Diethyl Carbonate Synthesis", Appl. Catal., A 366, 71 (2009) doi: 10.1016/j.apcata.2009.06.032
P. Brocorens, A. Van Vooren, M. L. Chabinyc, M. F. Toney, M. Shkunov, M. Heeney, I. McCulloch, J. Cornil and R. Lazzaroni, "Solid-State Supramolecular Organization of Polythiophene Chains Containing Thienothiophene Units", Adv. Mater. 21, 1193 (2009) doi: 10.1002/adma.200801668
A. T. Brunger, B. DeLaBarre, J. M. Davies and W. I. Weis, "X-ray Structure Determination at Low Resolution", Acta Crystallogr. D 65, 128 (2009) doi: 10.1107/S0907444908043795
C. Bryant, I. D. Kerr, M. Debnath, K. K. H. Ang, J. Ratnam, R. S. Ferreira, P. Jaishankar, D. Zhao, M. R. Arkin, J. H. McKerrow, L. S. Brinen and A. R. Renslo, "Novel Non-peptidic Vinylsulfones Targeting the S2and S3 Subsites of Parasite Cysteine Proteases", Bioorg. Med. Chem. Lett. 19, 6218 (2009) doi: 10.1016/j.bmcl.2009.08.098
M. W. Busbee, B. D. Kocar and S. G. Benner, "Irrigation Produces Elevated Arsenic in the Underlying Groundwater of a Semi-arid Basin in Southwestern Idaho", Appl. Geochem. 24, 843 (2009) doi: 10.1016/j.apgeochem.2009.01.011
Z. T. Campbell, W. R. Montfort and T. O. Baldwin, "Crystal Structure of the Bacterial Luciferase: Flavin Complex Provides Insight into the Function of the B Subunit", Biochemistry 48, 6085 (2009) doi: 10.1021/bi900003t
H. A. Castillo-Michel, N. Zuverza-Mena, J. G. Parsons, K. M. Dokken, M. Duarte-Gardea, J. R. Peralta-Videa and J. L. Gardea-Torresdey, "Accumulation, Speciation, and Coordination of Arsenic in an Inbred Line and a Wild Type Cultivar of the Desert Plant Species Chilopsis linearis (Desert willow)", Phytochemistry 70, 540 (2009) doi: 10.1016/j.phytochem.2009.01.010
H. A. Castillo-Michel, N. Hernandez, A. Martinez-Martinez, J. G. Parsons, J. R. Peralta-Videa and J. L. Gardea-Torresdey, "Coordination and Speciation of Cadmium in Corn Seedlings and Its Effects on Macro- and Micronutrients Uptake", Plant Physiol. Bioch. 47, 608 (2009) doi: 10.1016/j.plaphy.2009.02.005
N. C. Cates, R. Gysel, Z. Beiley, C. E. Miller, M. F. Toney, M. Heeney, I. McCulloch and M. D. McGehee, "Tuning the Properties of Polymer Bulk Heterojunction Solar Cells by Adjusting Fullerene Size to Control Intercalation", Nano Lett. 9, 4153 (2009) doi: 10.1021/nl9023808
R. Celikel, E. C. Peterson, S. M. Owens and K. I. Varughese, "Crystal Structures of a Therapeutic Single Chain Antibody in Complex with Methylenedioxymethamphetamine", Protein Sci. 18, 2336 (2009) doi: 10.1002/pro.244
E. Chalmin, F. Farges and G. E. Brown, Jr., "A Pre-edge Analysis of Mn K-edge XANES Spectra to Help Determine the Speciation of Manganese in Minerals and Glasses", Contrib. Mineral. Petr. 157, 111 (2009) doi: 10.1007/s00410-008-0323-z
S. L. Chan, L. Y. Low, S. Hsu, S. Li, T. Liu, E. Santelli, G. Le Negrate, J. C. Reed, V. L. Woods, Jr. and J. Pascual, "Crystal Structure of a Bacterial TIR Domain", J. Biol. Chem. 284, 21386 (2009) doi: 10.1074/jbc.C109.007591
T. H. Charpentier, P. T. Wilder, M. A. Liriano, K. M. Varney, S. Zhong, A. Coop, E. Pozharski, A. D. MacKerell, Jr., E. A. Toth and D. J. Weber, "Small Molecules Bound to Unique Sites in the Target Protein Binding Cleft of Calcium-Bound S100B as Characterized by Nuclear Magnetic Resonance and X-ray Crystallography", Biochemistry 48, 6202 (2009) doi: 10.1021/bi9005754
Y. L. Chen, J. G. Analytis, J. H. Chu, Z. K. Liu, S.-K. Mo, X. L. Qi, H. J. Zhang, D. H. Lu, X. Dai, S. C. Zhang, I. R. Fisher, Z. Hussain and Z.-X. Shen, "Experimental Realization of a Three-Dimensional Topological Insulator, Bi₂Te₃", Science 325, 178 (2009) doi: 10.1126/science.1173034
D. M. Chenoweth and P. B. Dervan, "Allosteric Modulation of DNA by Small Molecules", Proc. Natl. Acad. Sci. USA 106, 13175 (2009) doi: 10.1073/pnas.0906532106
S. Cheong, J. Watt, B. Ingham, M. F. Toney and R. D. Tilley, "In Situ and Ex Situ Studies of Platinum Nanocrystals: Growth and Evolution in Solution", J. Am. Chem. Soc. 131, 14590 (2009) doi: 10.1021/ja9065688
L. T. Cherney, M. M. Cherney, C. R. Garen and M. N. G. James, "The Structure of the Arginine Repressor from Mycobacterium tuberculosis Bound with Its DNA Operator and Co-repressor, L-Arginine", J. Mol. Biol. 388, 85 (2009) doi: 10.1016/j.jmb.2009.02.053
R. R. Chianelli, G. Berhault and B. Torres, "Unsupported Transition Metal Sulfide Catalysts: 100 Years of Science and Application", Catal. Today 147, 275 (2009) doi: 10.1016/j.cattod.2008.09.041
J. G. Chigvinadze, J. V. Acrivos, I. G. Akhvlediani, M. I. Chubabria, T. L. Kalabegishvili and T. I. Sanadze, "The Investigation of EPR Paramagnetic Probe Line Width and Shape Temperature Dependence in High-temperature Superconductors of Bi-Pb-Sr-Ca-Cu-O System", Phys. Lett. A 373, 874 (2009) doi: 10.1016/j.physleta.2008.11.066
J. Cho, R. Sarangi, J. Annaraj, S. Y. Kim, M. Kubo, T. Ogura, E. I. Solomon and W. Nam, "Geometric and Electronic Structure and Reactivity of a Mononuclear 'Side-on' Nickel(III)-peroxo Complex", Nat. Chem. 1, 568 (2009) doi: 10.1038/nchem.366
M. C. Choi, U. Raviv, H. P. Miller, M. R. Gaylord, E. Kris, D. Ventimiglia, D. J. Needleman, M. W. Kim, L. Wilson, S. C. Feinstein and C. R. Safinya, "Human Microtubule-Associated-Protein Tau Regulates the Number of Protofilaments in Microtubules: A Synchrotron X-ray Scattering Study", Biophys. J. 97, 519 (2009) doi: 10.1016/j.bpj.2009.04.047
S. Choi, P. A. O'Day and J. G. Hering, "Natural Attenuation of Arsenic by Sediment Sorption and Oxidation", Environ. Sci. Technol. 43, 4253 (2009) doi: 10.1021/es802841x
R. V. Chopdekar, E. Arenholz and Y. Suzuki, "Orientation and Thickness Dependence of Magnetization at the Interfaces of Highly Spin-polarized Manganite Thin Films ", Phys. Rev. B 79, 104417 (2009) doi: 10.1103/PhysRevB.79.104417
M. S. Chow, B. E. Eser, S. A. Wilson, K. O. Hodgson, B. Hedman, P. F. Fitzpatrick and E. I. Solomon, "Spectroscopy and Kinetics of Wild-Type and Mutant Tyrosine Hydroxylase: Mechanistic Insight into O₂ Activation", J. Am. Chem. Soc. 131, 7685 (2009) doi: 10.1021/ja810080c
K. B. Chung, J. P. Long, H. Seo, G. Lucovsky and D. Nordlund, "Thermal Evolution and Electrical Correlation of Defect States in Hf-based High-k Dielectrics on n-Type Ge (100): Local Atomic Bonding Symmetry", J. Appl. Phys. 106, 074102 (2009) doi: 10.1063/1.3236679
W. A. Clay, Z. Liu, W. Yang, J. D. Fabbri, J. E. Dahl, R. M. K. Carlson, Y. Sun, P. A. Pianetta, N. Melosh and Z.-X. Shen, "Origin of the Monochromatic Photoemission Peak in Diamondoid Monolayers", Nano Lett. 9, 57 (2009) doi: 10.1021/nl802310k
V. Cody, J. Pace, L. Lin and A. Gangjee, "The Z Isomer of 2,4-diaminofuro[2,3-d]pyrimidine Antifolate Promotes Unusual Crystal Packing in a Human Dihydrofolate Reductase Ternary Complex", Acta Crystallogr. F 65, 762 (2009) doi: 10.1107/S1744309109025548
V. Cody, J. Pace, J. Makin, J. Piraino, S. F. Queener and A. Rosowsky, "Correlations of Inhibitor Kinetics for Pneumocystis jirovacii and Human Dihydrofolate Reductase with Structural Data for Human Active Site Mutant Enzyme Complexes", Biochemistry 48, 1702 (2009) doi: 10.1021/bi801960h
F. Cohen, B. Alicke, L. O. Elliott, J. A. Flygare, T. Goncharov, S. F. Keteltas, M. C. Franklin, S. Frankovitz, J.-P. Stephan, V. Tsui, D. Vucic, H. Wong and W. J. Fairbrother, "Orally Bioavailable Antagonists of Inhibitor of Apoptosis Proteins Based on an Azabicyclooctane Scaffold", J. Med. Chem. 52, 1723 (2009) doi: 10.1021/jm801450c
A. R. Conlan, H. L. Axelrod, A. E. Cohen, E. C. Abresch, J. Zuris, D. Yee, R. Nechushtai, P. A. Jennings and M. L. Paddock, "Crystal Structures of Miner 1: The Redox-active 2Fe-2S Protein Causative in Wolfram Syndrome 2", J. Mol. Biol. 392, 143 (2009) doi: 10.1016/j.jmb.2009.06.079
A. R. Conlan, M. L. Paddock, H. L. Axelrod, A. E. Cohen, E. C. Abresch, S. Wiley, M. Roy, R. Nechushtai and P. A. Jennings, "The Novel 2Fe-2S Outer Mitochondrial Protein MitoNEET Displays Conformational Flexibility in Its N-terminal Cytoplasmic Tethering Domain", Acta Crystallogr. F 65, 654 (2009) doi: 10.1107/S1744309109019605
C. Corrado, Y. Jiang, F. Oba, M. Kozina, F. Bridges and J. Z. Zhang, "Synthesis, Structural, and Optical Properties of Stable ZnS:Cu,Cl Nanocrystals", J. Phys. Chem. A 13, 3830 (2009) doi: 10.1021/jp809666t
J. M. Crawford, T. P. Korman, J. W. Labonte, A. L. Vagstad, E. A. Hill, O. Kamari-Bidkorpeh, S.-C. Tsai and C. A. Townsend, "Structural Basis for Biosynthetic Programming of Fungal Aromatic Polyketide Cyclization", Nature 461, 1139 (2009) doi: 10.1038/nature08475
P. D'Angelo, A. Zitolo, V. Migliorati, G. Mancini, I. Persson and G. Chillemi, "Structural Investigation of Lanthanoid Coordination: A Combined XANES and Molecular Dynamics Study", Inorg. Chem. 48, 10239 (2009) doi: 10.1021/ic901264e
K. Dalal, N. Nguyen, M. Alami, J. Tan, T. F. Moraes, W. C. Lee, R. Maurus, S. S. Sligar, G. D. Brayer and F. Duong, "Structure, Binding and Activity of Syd, a SecY Interacting Protein", J. Biol. Chem. 284, 7897 (2009) doi: 10.1074/jbc.M808305200
E. Damian Risberg, F. Jalilehvand, B. O. Leung, L. G. M. Pettersson and M. Sandström, "Theoretical and Experimental Sulfur K-edge X-ray Absorption Spectroscopic Study of Cysteine, Cystine, Homocysteine, Penicillamine, Methionine and Methionine Sulfoxide", Dalton Trans. 3542 (2009) doi: 10.1039/b819257j
E. Damian Risberg, J. Mink, A. Abbasi, M. Yu. Skripkin, L. Hajba, P. Lindqvist-Reis, E. Bencze and M. Sandström, "Ambidentate Coordination in Hydrogen Bonded Dimethyl Sulfoxide, (CH₃)₂)SO···H₃O⁺, and in Dichlorobis(dimethyl sulfoxide) Palladium(II) and Platinum(II) Solid Solvates, by Vibrational and Sulfur K-edge X-ray Absorption Spectroscopy", Dalton Trans. 1328 (2009) doi: 10.1039/b814252a
D. R. Davies, B. Mamat, O. T. Magnusson, J. Christensen, M. H. Haraldson, R. Mishra, B. Pease, E. Hansen, J. Singh, D. Zembower, H. Kim, A. S. Kiselyov, A. B. Burgin, M. E. Gurney and L. J. Stewart, "Discovery of Leukotriene A4 Hydrolase Inhibitors Using Metabolomics Biased Fragment Crystallography", J. Med. Chem. 52, 4694 (2009) doi: 10.1021/jm900259h
C. J. De Feo, S. G. Aller, G. S. Siluvai, N. J. Blackburn and V. M. Unger, "Three-dimensional Structure of the Human Copper Transporter hCTR1", Proc. Natl. Acad. Sci. USA 106, 4237 (2009) doi: 10.1073/pnas.0810286106
J. de Vicente, R. T. Hendricks, D. B. Smith, J. B. Fell, J. Fischer, S. R. Spencer, P. J. Stengel, P. Mohr, J. E. Robinson, J. F. Blake, R. K. Hilgenkamp, C. Yee, G. Adjabeng, T. R. Elworthy, J. Li, B. Wang, J. T. Bamberg, S. F. Harris, A. Wong, V. J. P. Leveque, I. Najera, S. L. Pogam, S. Rajyaguru, G. Ao-leong, L. Alexandrova, S. Larrabee, M. Brandl, A. Briggs, S. Suktankar and R. Farrell, "Non-nucleoside Inhibitors of HCV Polymerase NS5B. Part 4: Structure-based Design, Synthesis, and Biological Evaluation of Benzo[d]isothizole-1,1-dioxides", Bioorg. Med. Chem. 19, 5652 (2009) doi: 10.1016/j.bmcl.2009.08.022
E. W. Debler, R. Müller, D. Hilvert and I. A. Wilson, "An Aspartate and a Water Molecule Mediate Efficient Acid-Base Catalysis in a Tailored Antibody Pocket", Proc. Natl. Acad. Sci. USA 106, 18539 (2009) doi: 10.1073/pnas.0902700106
S. Della-Longa, L. X. Chen, P. Frank, K. Hayakawa, K. Hatada and M. Benfatto, "Direct Deconvolution of Two-State Pump-Probe X-ray Absorption Spectra and the Structural Changes in a 100 ps Transient of Ni(II)-tetramesitylporphyrin", Inorg. Chem. 48, 3934 (2009) doi: 10.1021/ic8008943
D. M. DeLongchamp, R. Joseph. Kline, Y. Jung, D. S. Germack, E. K. Lin, A. J. Moad, L. J. Richter, M. F. Toney, M. Heeney and I. McCulloch, "Controlling the Orientation of Terraced Nanoscale "Ribbons" of a Poly(thiophene) Semiconductor", ACS Nano 3, 780 (2009) doi: 10.1021/nn800574f
C. A. Demmelmaier, R. E. White, J. A. van Bokhoven and S. L. Scott, "Evidence for a Chromasiloxane Ring Size Effect in Phillips (Cr/SiO₂) Polymerization Catalysts", J. Catal. 262, 44 (2009) doi: 10.1016/j.jcat.2008.11.024
A. Dey, Y. Jiang, P. Ortiz de Montellano, K. O. Hodgson, B. Hedman and E. I. Solomon, "S K-edge XAS and DFT Calculations on Cytochrome P450: Covalent and Ionic Contributions to the Cysteine-Fe Bond and Their Contribution to Reactivity", J. Am. Chem. Soc. 131, 7869 (2009) doi: 10.1021/ja901868q
L. Dharmarajan, J. L. Kraszewski, B. Mukhopadhyay and P. W. Dunten, "Expression, Purification and Crystallization of an Archaeal-type Phosphoenolpyruvate Carboxylase", Acta Crystallogr. F 65, 1193 (2009) doi: 10.1107/S1744309109042663
G. J. Dick, B. G. Clement, S. M. Webb, F. J. Fodrie, J. R. Bargar and B. M. Tebo, "Enzymatic Microbial Mn(II) Oxidation and Mn Biooxide Production in the Guaymas Basis Deep-Sea Hydrothermal Plume", Geochim. Cosmochim. Acta 73, 6517 (2009) doi: 10.1016/j.gca.2009.07.039
K. M. Dokken, J. G. Parsons, J. McClure and J. L. Gardea-Torresdey, "Synthesis and Structural Analysis of Copper(II) Cysteine Complexes", Inorg. Chim. Acta 362, 395 (2009) doi: 10.1016/j.ica.2008.04.037
C. J. Doonan, W. Morris, H. Furukawa and O. M. Yaghi, "Isoreticular Metalation of Metal-Organic Frameworks", J. Am. Chem. Soc. 131, 9492 (2009) doi: 10.1021/ja903251e
T. Doukov, H. Li, M. Soltis and T. L. Poulos, "Single Crystal Structural and Absorption Spectral Characterizations of Nitric Oxide Synthase Complexed with N^w-Hydroxy-L-arginine and Diatomic Ligands", Biochemistry 48, 10246 (2009) doi: 10.1021/bi9009743
O. W. Duckworth, J. R. Bargar, A. A. Jarzecki, O. Oyerinde, T. G. Spiro and G. Sposito, "The Exceptionally Stable Cobalt(III)-Desferrioxamine B Complex", Mar. Chem. 113, 114 (2009) doi: 10.1016/j.marchem.2009.01.003
O. W. Duckworth, J. R. Bargar and G. Sposito, "Coupled Biogeochemical Cycling of Iron and Manganese as Mediated by Microbial Siderophores", Biometals 22, 605 (2009) doi: 10.1007/s10534-009-9220-9
O. W. Duckworth, J. R. Bargar and G. Sposito, "Quantitative Structure-Activity Relationships for Aqueous Metal-Siderophore Complexes", Environ. Sci. Technol. 43, 343 (2008) doi: 10.1021/es802044y
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J. Zaitseva, K. M. Meneely and A. L. Lamb, "Structure of Escherichia coli Malate Dehydrogenase at 1.45 Å Resolution", Acta Crystallogr. F 65, 866 (2009) doi: 10.1107/S1744309109032217
B. M. Zeglis, V. C. Pierre, J. T. Kaiser and J. K. Barton, "A Bulky Rhodium Complex Bound to an Adenosine-Adenosine DNA Mismatch: General Architecture of the Metalloinsertion Binding Mode", Biochemistry 48, 4247 (2009) doi: 10.1021/bi900194e
L. Zhang, J. Lichtmannegger, K. H. Summer, S. Webb, I. J. Pickering and G. N. George, "Tracing Copper-Thiomolybdate Complexes in a Prospective Treatment for Wilson's Disease", Biochemistry 48, 891 (2009) doi: 10.1021/bi801926e
R. Zhang, C. Li, L. K. Williams, B. P. Rempel, G. D. Brayer and S. G. Withers, "Directed "in Situ" Inhibitor Elongation as a Strategy to Structurally Characterize the Covalent Glycosyl-Enzyme Intermediate of Human Pancreatic a-Amylase", Biochemistry 48, 10752 (2009) doi: 10.1021/bi901400p
Y. Zhang, M. M. Cherney, M. Solomonson, J. Liu, M. N. G. James and J. H. Weiner, "Preliminary X-ray Crystallographic Analysis of Sulfide:Quinone Oxidoreductase from Acidithiobacillus ferrooxidans", Acta Crystallogr. F 65, 839 (2009) doi: 10.1107/S1744309109027535
Y. Zhang, I. Thiele, D. Weekes, Z. Li, L. Jaroszewski, K. Ginalski, A. M. Deacon, J. Wooley, S. A. Lesley, I. A. Wilson, B. Palsson, A. Osterman and A. Godzik, "Three-dimensional Structural View of the Central Metabolic Network of Thermotoga maritima", Science 325, 1544 (2009) doi: 10.1126/science.1174671
Y. Zhang, J. Wei, H. W. Ou, J. F. Zhao, B. Zhou, F. Chen, M. Xu, C. He, G. Wu, H. Chen, M. Arita, K. Shimada, H. Namatame, M. Taniguchi, X. H. Chen and D. L. Feng, "Unusual Doping Dependence of the Electronic Structure and Coexistence of Spin-Density-Wave and Superconductor Phases in Single Crystalline Sr_1-xK_xFe₂As₂", Phys. Rev. Lett. 102, 127003 (2009) doi: 10.1103/PhysRevLett.102.127003
Z. Zhang, E. M. M. Bulloch, R. D. Bunker, E. N. Baker and C. J. Squire, "Structure and Function of GlmU from Mycobacterium tuberculosis", Acta Crystallogr. D 65, 275 (2009) doi: 10.1107/S0907444909001036
Z. Zhang, T. T. Caradoc-Davies, J. M. Dickson, E. N. Baker and C. J. Squire, "Structures of Glycinamide Ribonucleotide Transformylase (PurN) from Mycobacterium tuberculosis Reveal a Novel Dimer with Relevance to Drug Discovery", J. Mol. Biol. 389, 722 (2009) doi: 10.1016/j.jmb.2009.04.044
Z. Zhang, G. Helms, S. B. Clark, G. Tian, P. Zanonato and L. Rao, "Complexation of Uranium(VI) by Gluconate in Acidic Solutions: A Thermodynamic Study with Structural Analysis", Inorg. Chem. 48, 3814 (2009) doi: 10.1021/ic8018925
H. Zhao and L. Tang, "Crystallographic Characterization of a Multidomain Histidine Protein Kinase from an Essential Two-Component Regulatory System", Acta Crystallogr. F 65, 346 (2009) doi: 10.1107/S174430910900668X
L. Zhao, N. T. Nguyen, R. C. Fernandez and M. E. P. Murphy, "Crystallographic Characterization of the Passenger Domain of the Bordetella Autotransporter BrkA", Acta Crystallogr. F 65, 608 (2009) doi: 10.1107/S174430910901642X
Y. Zhao, J. G. Parsons, J. R. Peralta-Videa, M. L. Lopez-Moreno and J. L. Gardea-Torresdey, "Use of Synchrotron- and Plasma-based Spectroscopic Techniques to Determine the Uptake and Biotransformation of Chromium(III) and Chromium(VI) by Parkinsonia aculeata", Metallomics 1, 330 (2009) doi: 10.1039/b822927a
D. Zhu, B. Wu, R. Rick, J. Stöhr and A. Scherz, "Phase Retrieval in X-ray Lensless Holography by Reference Beam Tuning", Opt. Lett. 34, 2604 (2009)
A. Zidovska, H. M. Evans, K. K. Ewert, J. Quispe, B. Carragher, C. S. Potter and C. R. Safinya, "Liquid Crystalline Phases of Dendritic Lipid-DNA Self-Assemblies: Lamellar, Hexagonal, and DNA Bundles", J. Phys. Chem. B 113, 3694 (2009) doi: 10.1021/jp806863z
A. Zidovska, H. M. Evans, A. Ahmad, K. K. Ewert and C. R. Safinya, "The Role of Cholesterol and Structurally Related Molecules in Enhancing Transfection of Cationic Liposome-DNA Complexes", J. Phys. Chem. B 113, 5208 (2009) doi: 10.1021/jp809000e

Books & Conferences

J. C. Andrews, S. Brennan, Y. Liu, P. Pianetta, E. A. C. Almeida, M. C. H. van der Meulen, Z. Wu, Z. Mester, L. Ouerdane, J. Gelb, M. Feser, J. Rudati, A. Tkachuk and W. Yun, "Full-field Transmission X-ray Microscopy for Bio-imaging", in J. Phys. Conf. Ser. 186, 012081 (2009) doi: 10.1088/1742-6596/186/1/012081
J. C. Andrews, S. Brennan, P. Pianetta, H. Ishii, J. Gelb, M. Feser, J. Rudati, A. Tkachuk and W. Yun, "Full-field Transmission X-ray Microscopy at SSRL", J. Phys. Conf. Ser. 186, 012002 (2009) doi: 10.1088/1742-6596/186/1/012002
U. Bergmann and K. Knox, "Pseudo-color Enhanced X-ray Fluorescence Imaging of the Archimedes Palimpsest", Document Recognition and Retrieval XVI, K. Berkner, L. Likforman-Sulem (eds.), Proc. of SPIE-IS&T Electronic Imaging, SPIE 7247, 724702 (2009)
K. C. Kondapalli, A. Dancis and T. L. Stemmler, "Molecular Interaction between Frataxin and Ferrochelatase during Heme Assembly", in E. C. Long and M. J. Baldwin (eds.)., Bioinorganic Chemistry; Cellular Systems and Synthetic Models, ACS Symposium Series, 1012 (2009), pp. 17-30 doi: 10.1021/bk-2009-1012.ch002
R. M. Maier, S. Iverson, J. Chorover and S. M. Hayes, "Combined FISH, u-XRF and SEM Analysis to Examine Microbe-Metal Interactions on Root Surfaces", in Goldschmidt, Davos, Switzerland, 21-26 June 2009
N. Perdrial, A. Thompson and J. Chorover, "Effects of Mineral Tranformations, Contaminant Concentration, and CO₂ Pressure on Contaminant Speciation and Mobility in Simulated Hanford Sediments", in Clay Mineral Society Meeting, Billings, MT, 5-11 June 2009
E. I. Solomon, R. K. Hocking and M. Y. M. Pau, "Nature of the Catecholate-Fe(III) Bond: High Affinity Binding and Substrate Activation in Bioinorganic Chemistry", in Computational Inorganic and Bioinorganic Chemistry, Encyclopedia Inorganic Chemistry Monograph, Wiley (2009)
J. Yano, Y. Pushkar, J. Messinger, U. Bergmann, P. Glatzel and V. K. Yachandra, "Electronic Structure and Oxidation State Changes in the Mn₄Ca Cluster of Photosystem II", in Energy from the Sun, Proceedings of the 14th International Congress of Photosynthesis, J. Allen, E. Gantt, J. Golbeck, B. Osmond, B. (eds.) Springer, Dordrecht., in press